Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0143 ATGTCGTGGCAATCTTACATCGATGATCAACTTATGTACGAGATCGACGGCCAACGTCTCACATCCGCCGCCATTATCGGCCACGATGGTACTCTTTGGGCTCAGAGCTCCGACTTTCCTCAGTTTAGGCCAGAAGAGATATCTGCCATCATGAAAGATTTTGAGGAACCTGGATCTCTTGCCCCGACTGGATTACACCTTGCTGGATCTAAGTACATGGTTATTCAGGGAGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGAACTTCTGGGATCACTATAAAGAAAACAACCCAAGCACTCATTTTCGGTATTTACAACGAACCCATGACTCCGGGACAATGCAACATGATCGTCGAGAAGTTGGGAGATTACCTGCTTGATCAAGGCTATTAG 396 46.72 MSWQSYIDDQLMYEIDGQRLTSAAIIGHDGTLWAQSSDFPQFRPEEISAIMKDFEEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKGTSGITIKKTTQALIFGIYNEPMTPGQCNMIVEKLGDYLLDQGY 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1910601 1912360 + evm.model.ptg000003l.1649 HCH6g0143 545637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0143 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
HCH6g0143 131 FunFam Profilin 1 131 - -
HCH6g0143 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
HCH6g0143 131 CDD PROF 2 131 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
HCH6g0143 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
HCH6g0143 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0506 HCH-Chr10:4113823 HCH6g0143 HCH-Chr6:1910601 1.60E-57 dispersed
HCH10g0505 HCH-Chr10:4110645 HCH6g0143 HCH-Chr6:1910601 9.20E-53 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0143 K05759 - csv:101218089 231.491