Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0143 ATGTCGTGGCAATCTTACATCGATGATCAACTTATGTACGAGATCGACGGCCAACGTCTCACATCCGCCGCCATTATCGGCCACGATGGTACTCTTTGGGCTCAGAGCTCCGACTTTCCTCAGTTTAGGCCAGAAGAGATATCTGCCATCATGAAAGATTTTGAGGAACCTGGATCTCTTGCCCCGACTGGATTACACCTTGCTGGATCTAAGTACATGGTTATTCAGGGAGAATCTGGAGCTGTTATCCGTGGAAAGAAGGGAACTTCTGGGATCACTATAAAGAAAACAACCCAAGCACTCATTTTCGGTATTTACAACGAACCCATGACTCCGGGACAATGCAACATGATCGTCGAGAAGTTGGGAGATTACCTGCTTGATCAAGGCTATTAG 396 46.72 MSWQSYIDDQLMYEIDGQRLTSAAIIGHDGTLWAQSSDFPQFRPEEISAIMKDFEEPGSLAPTGLHLAGSKYMVIQGESGAVIRGKKGTSGITIKKTTQALIFGIYNEPMTPGQCNMIVEKLGDYLLDQGY 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1910601 1912360 + evm.model.ptg000003l.1649 HCH6g0143 545637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0143 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
HCH6g0143 131 FunFam Profilin 1 131 - -
HCH6g0143 131 PANTHER PROFILIN 1 131 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
HCH6g0143 131 CDD PROF 2 131 IPR005455 GO:0003779(InterPro)
HCH6g0143 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
HCH6g0143 131 SUPERFAMILY Profilin (actin-binding protein) 2 131 IPR036140 -
HCH6g0143 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0143 K05759 - - csv:101218089 231.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0506 HCH-Chr10:4113823 HCH6g0143 HCH-Chr6:1910601 1.60E-57 dispersed
HCH10g0505 HCH-Chr10:4110645 HCH6g0143 HCH-Chr6:1910601 9.20E-53 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 4.1e-215 743.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT2G37620 96.6 1.2e-214 742.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 1.0e-213 739.2
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 2.3e-213 738.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.3e-213 738.0
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT2G37620 94.7 1.5e-212 735.3
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 1.2e-214 742.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 6.0e-214 740.0
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.1e-212 735.7
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.9e-212 734.9
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 2.4e-210 728.0
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.1e-210 727.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 5.4e-215 743.4
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 2.7e-214 741.1
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.1e-213 736.9
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 8.7e-213 736.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 1.1e-210 729.2
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.4e-210 728.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 8.4e-216 746.1
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G12110 96.8 1.6e-214 741.9
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 2.7e-214 741.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 6.6e-213 736.5
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 8.7e-213 736.1
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.4e-209 723.8
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.6e-209 723.0
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.3e-208 722.2
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.3e-208 722.2
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 2.9e-208 721.1
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT3G18780 91.8 1.4e-207 718.8
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.5e-209 725.3
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 4.4e-209 723.8
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 4.4e-209 723.8
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 9.9e-209 722.6
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 1.7e-208 721.8
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 4.9e-208 720.3
HCH14g0151 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH2g0230 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 7.6e-217 749.6
HCH1g0460 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 4.6e-214 740.3
HCH2g1089 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.0e-213 739.2
HCH9g0669 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 3.0e-213 737.6
HCH13g0483 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 6.6e-213 736.5
HCH4g1896 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 8.7e-213 736.1
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT2G19760 77.4 8.0e-57 216.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT2G19760 74.6 2.0e-55 211.8
HCH6g0143 . 1 129 Cytoskeleton Gene Families AT2G19760 69.0 2.3e-51 198.4
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 3.1e-56 214.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29350 75.4 9.8e-55 209.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29350 70.8 6.0e-52 200.3
HCH10g0506 . 1 133 Cytoskeleton Gene Families AT4G29340 84.3 2.4e-64 241.5
HCH10g0505 . 3 132 Cytoskeleton Gene Families AT4G29340 72.9 3.1e-56 214.5
HCH6g0143 . 1 130 Cytoskeleton Gene Families AT4G29340 69.2 8.0e-52 199.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112