Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0149 ATGAATCAGCTGAGAATTCTCCATTCATTCTTCTTACTTTACTTTCCTCTTGTTCTTCTTCTAAATCATTCTCTCTGTTCCTCTCTCTCTACCCCATTAAACTGTACGGACACGACTCGTTTATGCACTTCATTTCTAGCCTTCAAGCCTCAGCCTAATCAAACCCTCTCTGTGATTCAAAGCATGTTTGATGTTTTCTCAGAAGATGTAACCATAGAAGGCAATGGCCATGACTATGTTTTCATTAGAAAAAACTGTTCTTGTGCTTCTGGGTTGAAGAAATACATAACTAATACTACTTTTACCATTAAATCAAGCAATGGTTATGTTTATGATTTGGTCACGGCAGCCTATGATGGGCTTGCTTTGATTACGAATTCTACTCGAATGGCGAGGAACGGTGCCGTTGTGTCGTTGAGGTTGTTTTGTGCTTGTTCCAGTGGATTATGGAACTATTTGATGAGCTATGTTATGAGAGAAGGGGATACTATTGAGGGTTTAGCTAGTAGGTTTGGGGTTAGTATGGATAGTATTGAGGCTGTGAATGAAATTGGGAATCCGGAAAATATTACTGTGGGTGCTTTGTATTATATTCCCTTGAATTCGGTTCCTGGTGAGCCTTATCCATTGGAGACTGATGTTTCTCCTGCTCCTGCTCCTGCCAATTTTCAGAACAATTTCTCAGCTAATGCGGAGAACTCCAAGGGTCATCCTCCATATATATGGATTGTTGGAAGTTTAGGAGTTGTTCTTATTCTGATTTTACTTAGCGTAGTATTTTATGTTTGCTCAAGGTGGTTGAACTGCTGTTCTAGATCCAGGAGCAGTCGCACAAAAGATCCTGGTGTCAAGATTTCCCATAAGTTCCAAATTCTTGGGAAGTCGAGTTTTTGTTGTGCATCAGGGAGGTATATCTGCTGTAGTTCTGCAGATTGGAAGCAACCCAATGTGGAGTCTAGCGATAACCAGAGCGCAATTCCGAAAGCTCTTGGGAGCAATGTATTTGATGTAGACAAACCTGTAGTTTTCACATGTGAAGAAATTCTCACCTCAACTGATGGTTTTTCTGATACAAGTCTACTTGGCCATGGAACTTATGGTTCAGTGTATTATGGCATCTTGCGAGACCAGGAGGTCGCAATAAAAAGAATGACTGCAACAAAAACTAAAGAATTTATGGCAGAGATGAAAGTCCTTTGCAAGGTCCATCATTCAAATCTGGTAGAATTGATCGGTTATGCAGCCAGTGATGAGGAGCTCTTTCTTATTTATGAATATGCTCAAAAAGGTCCACTTAAAAGTCATTTACATGATCCTCAGAACAAGGGTCATACATCACTATCTTGGATCATGAGACTCCAAATTGCCCTTGATACTGCTAGAGGTCTTGAATACATTCATGAGCACACTAAAACTCATTATGTCCATAGAGATATTAAGACAAGCAATATCTTACTTGACGGTTCATTTAGGGCGAAGATTTCTGATTTTGGGTTGGCAAAGCTTGTTGGAAAAACAAATGAGGGTGAAGCTACAGTAACCAAAGTTGTAGGTACATACGGTTATCTGGCTCCCGAATACTTGAGTAACGGTCTTGCCACAACCAAAAGTGATGTTTATGCTTTTGGTGTTGTTCTTTTTGAGGTTATATGTGGAAAGGAGGCAATTATACGAACTGAAGGCACAACTATGAAAAATCCTGAAAGACGTTCACTAGCATCCATTATGTTAGCCATTCTTCGGAACTCGCCTGATCATGTGAATATGTCAAGTTTGAAAGATCAAGTTGATCCAACCATGATGGATTTGTATCCTCATGACTGTCTATTTAAGATGGCCATGTTGGCAAAGCAGTGTGTGGATGAGGATCCTATCTTACGGCCTGACATGAAGCAAGTCGTAATATCCTTATCGCAGATTCTCCTCTCTTCCGTGGAGTGGGAAGCGACTCTTGCTGGTAACAGCCAAGTTTTTAGTGGTCTTGTCCAAGGAAGATAG 1998 40.49 MNQLRILHSFFLLYFPLVLLLNHSLCSSLSTPLNCTDTTRLCTSFLAFKPQPNQTLSVIQSMFDVFSEDVTIEGNGHDYVFIRKNCSCASGLKKYITNTTFTIKSSNGYVYDLVTAAYDGLALITNSTRMARNGAVVSLRLFCACSSGLWNYLMSYVMREGDTIEGLASRFGVSMDSIEAVNEIGNPENITVGALYYIPLNSVPGEPYPLETDVSPAPAPANFQNNFSANAENSKGHPPYIWIVGSLGVVLILILLSVVFYVCSRWLNCCSRSRSSRTKDPGVKISHKFQILGKSSFCCASGRYICCSSADWKQPNVESSDNQSAIPKALGSNVFDVDKPVVFTCEEILTSTDGFSDTSLLGHGTYGSVYYGILRDQEVAIKRMTATKTKEFMAEMKVLCKVHHSNLVELIGYAASDEELFLIYEYAQKGPLKSHLHDPQNKGHTSLSWIMRLQIALDTARGLEYIHEHTKTHYVHRDIKTSNILLDGSFRAKISDFGLAKLVGKTNEGEATVTKVVGTYGYLAPEYLSNGLATTKSDVYAFGVVLFEVICGKEAIIRTEGTTMKNPERRSLASIMLAILRNSPDHVNMSSLKDQVDPTMMDLYPHDCLFKMAMLAKQCVDEDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1993995 1999753 + evm.model.ptg000003l.1643 HCH6g0149 545643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0149 665 Gene3D Transferase(Phosphotransferase) domain 1 428 652 - -
HCH6g0149 665 Pfam LysM domain 156 193 IPR018392 -
HCH6g0149 665 SMART serkin_6 355 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0149 665 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0149 665 FunFam Kinase family protein 329 426 - -
HCH6g0149 665 ProSiteProfiles LysM domain profile. 154 198 IPR018392 -
HCH6g0149 665 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 20 654 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
HCH6g0149 665 ProSitePatterns Protein kinases ATP-binding region signature. 361 382 IPR017441 GO:0005524(InterPro)
HCH6g0149 665 SUPERFAMILY Protein kinase-like (PK-like) 337 637 IPR011009 -
HCH6g0149 665 Gene3D Phosphorylase Kinase; domain 1 329 426 - -
HCH6g0149 665 ProSiteProfiles Protein kinase domain profile. 355 642 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0149 665 SUPERFAMILY LysM domain 154 199 IPR036779 -
HCH6g0149 665 FunFam PTI1-like tyrosine-protein kinase 3 427 651 - -
HCH6g0149 665 SMART LysM_2 155 199 IPR018392 -
HCH6g0149 665 Pfam Protein tyrosine and serine/threonine kinase 360 635 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0149 665 Gene3D LysM domain 151 205 IPR036779 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g1060 HCH-Chr1:58412975 HCH6g0149 HCH-Chr6:1993995 7.90E-102 dispersed
HCH6g0149 HCH-Chr6:1993995 HCH7g0254 HCH-Chr7:1751507 3.00E-75 dispersed
HCH6g0149 HCH-Chr6:1993995 HCH1g0825 HCH-Chr1:56890772 2.80E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81547 PF07714 PK_Tyr_Ser-Thr 2.50E-49 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0149 - - - 0.0