Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0162 ATGGCGAAACAAAGCAATTCAGAAGCTCAAAGTACGAGCAACTCGAGTTCTTGTCTTCCACATTCGACCACAAAAACCTCGGAAATGAAAAAACCACCTTATAGGGGTGTCCGAAAGAGAAGTTGGGGCAAATGGGTGTCGGAAATCCGTCAGCCAAGGAAGAAATCTCGTATTTGGCTCGGCACTTTCTCCACTCCGGAGATGGCGGCGCGTGCTCACGATGTGGCGGCTCTCAGCATTAAGGGGGAGTCGGCCAAGGCGATCCTCAACTTCCCCGAACTCGCCGATTCGCTACCCCGGCCGGTATCGTTAATGCCACGGGATATTCAGGCCGCCGCAGCCAAAGCAGCTTCTATGGTCGACTTTGGTTCTCCGTTATCGACATCGACATTGACATCGTCGTCGAAGGATGAGGAAGCTGAGGAATTGGGTAAGATTGTGGAGTTGCCAAACATTGAAGAAGAGATCCGTTTTAAGGCATGGAATGAGTTTGCATTAATGGAATGGGTTGATGGGTGGGGATATCCATCTTTTGCGGCGGCGGAAACAGATTTCTGGGTGGGATTTTCCGATGAGAGGATGATTCCGAGAATCTCCAACGACGGTCTAGAATGGGAGTAA 621 50.56 MAKQSNSEAQSTSNSSSCLPHSTTKTSEMKKPPYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFSTPEMAARAHDVAALSIKGESAKAILNFPELADSLPRPVSLMPRDIQAAAAKAASMVDFGSPLSTSTLTSSSKDEEAEELGKIVELPNIEEEIRFKAWNEFALMEWVDGWGYPSFAAAETDFWVGFSDERMIPRISNDGLEWE 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2174343 2174963 - evm.model.ptg000003l.1630 HCH6g0162 545656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0162 206 ProSiteProfiles AP2/ERF domain profile. 33 92 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0162 206 Pfam AP2 domain 34 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0162 206 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0162 206 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0162 206 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 140 IPR051032 -
HCH6g0162 206 FunFam Ethylene-responsive transcription factor 2 32 93 - -
HCH6g0162 206 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677(InterPro)
HCH6g0162 206 Gene3D AP2/ERF domain 33 93 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0162 206 CDD AP2 34 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0162 206 MobiDBLite consensus disorder prediction 1 29 - -
HCH6g0162 206 SMART rav1_2 33 98 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0162 206 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0162 HCH-Chr6:2174343 HCH6g1032 HCH-Chr6:45048249 1.40E-31 dispersed
HCH10g0484 HCH-Chr10:3943801 HCH6g0162 HCH-Chr6:2174343 3.40E-35 wgd
HCH4g1420 HCH-Chr4:10429685 HCH6g0162 HCH-Chr6:2174343 3.40E-39 wgd
HCH6g0162 HCH-Chr6:2174343 HCH8g0715 HCH-Chr8:43891189 2.50E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33678 PF00847 AP2 7.30E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0162 K09286 - csv:101222354 236.498