Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0168 ATGGGCGCCGGCGCCGACATGTCCAATAATCGACTCACTGACTTCTTTTCCTCTCCCGCTCTTTCTCTTACCCTCGCTGGGATTTTCCGCCACGCGGAAACGGCGAGGACGGATGTTGAGATGGAGGAAGTCGATGACGGAAGCGGCGGAGGGCGGAGAGAAGATGTCGCGGAGATTAGTAGTGAGAATTCGGGTCCGTTTAGGTCGAGATCGGATGACGATTTCGATGACGGTGGAGTTCATGAAGATGATGAAGATGCTGATCATGATTGTCAGATGAAGAAAAGGAAGAAATATCACCGGCATACCACTGAGCAGATTAGAGAAATGGAAGCGTTATTCAAAGAATCGCCGCATCCAGATGAGAAGCAAAGGCAACAACTAAGCAAGAGATTAGGGCTTTCTCCAAGACAGGTTAAGTTTTGGTTTCAAAATCGTCGAACTCAAATCAAGGCCATTCAAGAGCGCCATGAGAACTCACTGTTGAAAGCTGAAATGGAAAAACTCCGAGATGAAAATAAAGTCATGCGAGAGATAACTAAAAACAAAGCTTGTTGCCCAAACTGTGGCGGAGGCGCCAATGCTAGCGGCGGAGACACCGTGCTAACAACCGCCGAGCAACTGCGAATTAAAAATGCCAAGCTCAAAGCTGAGGTTGAAAAACTCCGAGCAGCTCTCGGAAAACACCCGCCGGGAGCAGCATCTCCTTCATACTCAGCCGGAAATGAGCAAGAGAACCGGAGCTGCTTAGATTTTTACACCGGAATTTTCGGGCTGGAAACGTCAAGGATCATGGAGAAAGTTCATCAAGCTCTGGACGAGCTTCTGAGAATGGCTACCGCCGGCGACCCACTTTGGGTCAGAAGTGTGGAGACCGGAAGAGAGATATTAAACTACGACGAGTACGTAAAAACTTTCCATCTCAAGAATTCAAACACCCGTCGGCCTAAGAGACATATTGAAGCTACTAGAGAGACTGGAATCGTCTTCATGGAGCCCTCTAGGCTGCTTCAGAGCTTCATGGACGAGAATCAATGGAAGGAGATGTTTCCTTTCATGATCTCCAAGGCAGCTACAGTAGATCTAATCAGTAATGGAGAAGGTGGAAACTGGAATGGTGTAGTGCAATTGATGTTTGCAGAGTTGCAGATGATGACACCAATGGTACCAACCAGAGAAGTGTATTTTATCCGCCATTGCAAGCAACTCACGGCTGAACGGTGGGCAATCGTCGATGTTTCGATCGAAAACGTCGAAGATAATGTTGATGCTTCCTTGGTGAAATGCAGAAAACGTCCTTCTGGTTGTATCATTGAGGATGAATGTAATGGTCATTGCAAGGTAACAATGGTGGAGCATTTGGAATGCCAGAAAAACACAGTTCACAACTTATACCGCTGTTTAGTTAACAATGGAACTGCCTTTGGAGCAAAGCATTGGATGACAACTTTGCAACTCCAATGTGAGCGCCTTGCTTTCTTCATGGCTACCAATATCCCCATGAAGGACTCAACAGGAGTTGGGACTCTAGCTGGAAGAAAGAGCAGTTTAAAATTGGCTCAGAGAATGACTTGTGGTTTTTCTCAAGCAATTGCAGCTTCAAGCTACAACACATGGACCAGAGTTGCAGGCAGAACAGGGGAAGACATTAGAGTTTCTTCTAGGAAGAACCTGAATGACCCTGGAGAACCTGTTGGAGTGATTCTGTGTGCAGCTTCTTCTGTTTGGTTGCCTGTCACTCCCCATGTCCTCTTTGATTTCTTGCGAGATGAAACTCACCGAAACGAGTGGGACACTATGTTCTGTGGAGAACAAGCTCAATCGATCGCAAACTTGGCTAAAGGACAGGATCGTGGCAACTCGGTTACCCTTCAAACATTTGCATCAAAAGAGAGCAGCCTGTGGATACTCCAAGATAGCAGCACAAATGCCTCAGAATCCATGGTGGTCTACTCTAGAGTGGATGTTAATGGGATGCAGTCTGTGATGACAGGATGTGACTCCAGCAATATTTCCATATTGCCATCAGGATTTTCAATTCTTCCTGATGGGATTGAATCAAAACCCCTTGTCATCACTTGTCAGCAAGAGGAGAAAACTAATGATACAGAAGGAGGAACTTTGCTTACAATTGCAATCCAAATCCTTACTGATAACTCTCCCACAGCAAAACCAACTGTGGAATCTCTGGAGTATGTTAAAAGTGTCATATCTTGCACACTCAAAAATATCAGGACAAGCATGCAGTGTCAGGATGATTGA 2262 45.93 MGAGADMSNNRLTDFFSSPALSLTLAGIFRHAETARTDVEMEEVDDGSGGGRREDVAEISSENSGPFRSRSDDDFDDGGVHEDDEDADHDCQMKKRKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIKAIQERHENSLLKAEMEKLRDENKVMREITKNKACCPNCGGGANASGGDTVLTTAEQLRIKNAKLKAEVEKLRAALGKHPPGAASPSYSAGNEQENRSCLDFYTGIFGLETSRIMEKVHQALDELLRMATAGDPLWVRSVETGREILNYDEYVKTFHLKNSNTRRPKRHIEATRETGIVFMEPSRLLQSFMDENQWKEMFPFMISKAATVDLISNGEGGNWNGVVQLMFAELQMMTPMVPTREVYFIRHCKQLTAERWAIVDVSIENVEDNVDASLVKCRKRPSGCIIEDECNGHCKVTMVEHLECQKNTVHNLYRCLVNNGTAFGAKHWMTTLQLQCERLAFFMATNIPMKDSTGVGTLAGRKSSLKLAQRMTCGFSQAIAASSYNTWTRVAGRTGEDIRVSSRKNLNDPGEPVGVILCAASSVWLPVTPHVLFDFLRDETHRNEWDTMFCGEQAQSIANLAKGQDRGNSVTLQTFASKESSLWILQDSSTNASESMVVYSRVDVNGMQSVMTGCDSSNISILPSGFSILPDGIESKPLVITCQQEEKTNDTEGGTLLTIAIQILTDNSPTAKPTVESLEYVKSVISCTLKNIRTSMQCQDD 753
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2233292 2238363 + evm.model.ptg000003l.1624 HCH6g0168 545662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0168 753 ProSiteProfiles 'Homeobox' domain profile. 93 153 IPR001356 GO:0003677(InterPro)
HCH6g0168 753 Coils Coil 152 182 - -
HCH6g0168 753 Pfam START domain 270 490 IPR002913 GO:0008289(InterPro)
HCH6g0168 753 MobiDBLite consensus disorder prediction 39 102 - -
HCH6g0168 753 Gene3D - 266 490 IPR023393 -
HCH6g0168 753 SMART START_1 266 490 IPR002913 GO:0008289(InterPro)
HCH6g0168 753 CDD homeodomain 96 151 IPR001356 GO:0003677(InterPro)
HCH6g0168 753 FunFam Homeobox-leucine zipper protein GLABRA 2 266 489 - -
HCH6g0168 753 SUPERFAMILY Bet v1-like 533 714 - -
HCH6g0168 753 Coils Coil 205 225 - -
HCH6g0168 753 CDD START_ArGLABRA2_like 262 489 - -
HCH6g0168 753 ProSiteProfiles START domain profile. 257 493 IPR002913 GO:0008289(InterPro)
HCH6g0168 753 ProSitePatterns 'Homeobox' domain signature. 128 151 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH6g0168 753 SMART HOX_1 95 157 IPR001356 GO:0003677(InterPro)
HCH6g0168 753 MobiDBLite consensus disorder prediction 39 59 - -
HCH6g0168 753 FunFam Homeobox-leucine zipper protein HDG1 81 169 - -
HCH6g0168 753 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 84 751 IPR042160 -
HCH6g0168 753 Pfam Homeodomain 96 151 IPR001356 GO:0003677(InterPro)
HCH6g0168 753 SUPERFAMILY Bet v1-like 260 491 - -
HCH6g0168 753 Gene3D - 81 167 - -
HCH6g0168 753 SUPERFAMILY Homeodomain-like 82 154 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0168 HCH-Chr6:2233292 HCH7g0229 HCH-Chr7:1529625 8.40E-151 dispersed
HCH4g1401 HCH-Chr4:10256039 HCH6g0168 HCH-Chr6:2233292 1.40E-235 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33679 PF01852 START 1.80E-55 CL0209 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0168 K09338 - csv:101221341 1132.09