Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0174 ATGGATTTCTGGCCGGAGTTCGTCGCTAGCAGCTGGGGAAAAGAATTCATCGCCGGTGGAATCGGCGGGGCCGCCGGTATCATATCGGGTTACCCACTAGACACTCTACGCATTCGACAACAACACTCGACTTCCGGCTCCGCCGTCAGCGTCCTCCGTAATATAATCTCGAACGGCGGCCCCTCCGCCTTGTATAGAGGAATGGGAGCGCCACTAGCTTCCGTCACTTTTCAGAACGCCATTGTTTTCCAAACCTACGCTGTCCTCTGCCGGGCGTTCGATCCGGCCGTCACCGACACCCGACCACCGTCGTACAAAGCCGTCGCGCTTGGCGGTTTCGGCACCGGCGCTCTCCAAAGCCTTCTCCTAACCCCAGTAGAACTGGTCAAGATCCGTCTTCAATTACAAGGCTCAACCACAAGCCCCGGCCACCAAAATCCGGCGTCACCAAATCTCGGACCATCAGAAGTAGCCAAAAAAATCTTCAAAACCGAAGGCTACCGCGGGCTCTACAGAGGCTTAACAATAACAATGCTAAGAGACGCTCCTGCCCATTGCTTCTACTTCTGGACTTACGAATTCATGAGAGAGAAGCTTCATCCCGGATGCCGGAAAACCGGGCAAGAAACGTTGAGGACGATGTTGATTTCTGGAGGTCTCGCCGGAGTTGCTAGTTGGGTTTGTTGTTATCCTTTAGATGTAGTGAAAACAAGGCTTCAAGCTCAATCAAAACTATCGTTTCAGAAATATAGTGGGATTGTTGATTGTTTTTCAAAGAGTGTGAGGGAAGAAGGATATGGTGTTTTGTGGCGTGGATTAGGGACTGCCATTGCTAGAGCTTTTGTTGTGAACGGAGCTATATTTTCTGCTTATGAATTAACTCTGAGGTGTTTGTTTACTAATGGTGGGTTTCATGCAGAGAACACGATTTGA 933 50.27 MDFWPEFVASSWGKEFIAGGIGGAAGIISGYPLDTLRIRQQHSTSGSAVSVLRNIISNGGPSALYRGMGAPLASVTFQNAIVFQTYAVLCRAFDPAVTDTRPPSYKAVALGGFGTGALQSLLLTPVELVKIRLQLQGSTTSPGHQNPASPNLGPSEVAKKIFKTEGYRGLYRGLTITMLRDAPAHCFYFWTYEFMREKLHPGCRKTGQETLRTMLISGGLAGVASWVCCYPLDVVKTRLQAQSKLSFQKYSGIVDCFSKSVREEGYGVLWRGLGTAIARAFVVNGAIFSAYELTLRCLFTNGGFHAENTI 310
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 2285486 2287556 - evm.model.ptg000003l.1618 HCH6g0174 545668
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0174 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 198 IPR018108 -
HCH6g0174 310 Pfam Mitochondrial carrier protein 109 199 IPR018108 -
HCH6g0174 310 Pfam Mitochondrial carrier protein 10 91 IPR018108 -
HCH6g0174 310 Pfam Mitochondrial carrier protein 212 300 IPR018108 -
HCH6g0174 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 209 297 IPR018108 -
HCH6g0174 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
HCH6g0174 310 SUPERFAMILY Mitochondrial carrier 11 292 IPR023395 -
HCH6g0174 310 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
HCH6g0174 310 PRINTS Mitochondrial carrier protein signature 171 189 IPR002067 GO:0055085(InterPro)
HCH6g0174 310 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
HCH6g0174 310 PRINTS Mitochondrial carrier protein signature 218 240 IPR002067 GO:0055085(InterPro)
HCH6g0174 310 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 9 298 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
HCH6g0174 310 Gene3D Mitochondrial carrier domain 13 302 IPR023395 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0276 HCH-Chr5:1623942 HCH6g0174 HCH-Chr6:2285486 3.20E-37 dispersed
HCH6g0174 HCH-Chr6:2285486 HCH6g1109 HCH-Chr6:45748699 3.10E-43 dispersed
HCH11g0073 HCH-Chr11:1049460 HCH6g0174 HCH-Chr6:2285486 3.50E-26 transposed
HCH4g1388 HCH-Chr4:10190319 HCH6g0174 HCH-Chr6:2285486 1.40E-128 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0174 K15109 - csv:101222749 536.954