Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0174 | ATGGATTTCTGGCCGGAGTTCGTCGCTAGCAGCTGGGGAAAAGAATTCATCGCCGGTGGAATCGGCGGGGCCGCCGGTATCATATCGGGTTACCCACTAGACACTCTACGCATTCGACAACAACACTCGACTTCCGGCTCCGCCGTCAGCGTCCTCCGTAATATAATCTCGAACGGCGGCCCCTCCGCCTTGTATAGAGGAATGGGAGCGCCACTAGCTTCCGTCACTTTTCAGAACGCCATTGTTTTCCAAACCTACGCTGTCCTCTGCCGGGCGTTCGATCCGGCCGTCACCGACACCCGACCACCGTCGTACAAAGCCGTCGCGCTTGGCGGTTTCGGCACCGGCGCTCTCCAAAGCCTTCTCCTAACCCCAGTAGAACTGGTCAAGATCCGTCTTCAATTACAAGGCTCAACCACAAGCCCCGGCCACCAAAATCCGGCGTCACCAAATCTCGGACCATCAGAAGTAGCCAAAAAAATCTTCAAAACCGAAGGCTACCGCGGGCTCTACAGAGGCTTAACAATAACAATGCTAAGAGACGCTCCTGCCCATTGCTTCTACTTCTGGACTTACGAATTCATGAGAGAGAAGCTTCATCCCGGATGCCGGAAAACCGGGCAAGAAACGTTGAGGACGATGTTGATTTCTGGAGGTCTCGCCGGAGTTGCTAGTTGGGTTTGTTGTTATCCTTTAGATGTAGTGAAAACAAGGCTTCAAGCTCAATCAAAACTATCGTTTCAGAAATATAGTGGGATTGTTGATTGTTTTTCAAAGAGTGTGAGGGAAGAAGGATATGGTGTTTTGTGGCGTGGATTAGGGACTGCCATTGCTAGAGCTTTTGTTGTGAACGGAGCTATATTTTCTGCTTATGAATTAACTCTGAGGTGTTTGTTTACTAATGGTGGGTTTCATGCAGAGAACACGATTTGA | 933 | 50.27 | MDFWPEFVASSWGKEFIAGGIGGAAGIISGYPLDTLRIRQQHSTSGSAVSVLRNIISNGGPSALYRGMGAPLASVTFQNAIVFQTYAVLCRAFDPAVTDTRPPSYKAVALGGFGTGALQSLLLTPVELVKIRLQLQGSTTSPGHQNPASPNLGPSEVAKKIFKTEGYRGLYRGLTITMLRDAPAHCFYFWTYEFMREKLHPGCRKTGQETLRTMLISGGLAGVASWVCCYPLDVVKTRLQAQSKLSFQKYSGIVDCFSKSVREEGYGVLWRGLGTAIARAFVVNGAIFSAYELTLRCLFTNGGFHAENTI | 310 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 2285486 | 2287556 | - | evm.model.ptg000003l.1618 | HCH6g0174 | 545668 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0174 | 310 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 103 | 198 | IPR018108 | - | |
| HCH6g0174 | 310 | Pfam | Mitochondrial carrier protein | 109 | 199 | IPR018108 | - | |
| HCH6g0174 | 310 | Pfam | Mitochondrial carrier protein | 10 | 91 | IPR018108 | - | |
| HCH6g0174 | 310 | Pfam | Mitochondrial carrier protein | 212 | 300 | IPR018108 | - | |
| HCH6g0174 | 310 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 209 | 297 | IPR018108 | - | |
| HCH6g0174 | 310 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 10 | 92 | IPR018108 | - | |
| HCH6g0174 | 310 | SUPERFAMILY | Mitochondrial carrier | 11 | 292 | IPR023395 | - | |
| HCH6g0174 | 310 | PRINTS | Mitochondrial carrier protein signature | 118 | 136 | IPR002067 | GO:0055085(InterPro) | |
| HCH6g0174 | 310 | PRINTS | Mitochondrial carrier protein signature | 171 | 189 | IPR002067 | GO:0055085(InterPro) | |
| HCH6g0174 | 310 | PRINTS | Mitochondrial carrier protein signature | 15 | 28 | IPR002067 | GO:0055085(InterPro) | |
| HCH6g0174 | 310 | PRINTS | Mitochondrial carrier protein signature | 218 | 240 | IPR002067 | GO:0055085(InterPro) | |
| HCH6g0174 | 310 | PANTHER | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED | 9 | 298 | IPR050567 | GO:0006810(PANTHER)|GO:0022857(PANTHER) | |
| HCH6g0174 | 310 | Gene3D | Mitochondrial carrier domain | 13 | 302 | IPR023395 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH5g0276 | HCH-Chr5:1623942 | HCH6g0174 | HCH-Chr6:2285486 | 3.20E-37 | dispersed | |
| HCH6g0174 | HCH-Chr6:2285486 | HCH6g1109 | HCH-Chr6:45748699 | 3.10E-43 | dispersed | |
| HCH11g0073 | HCH-Chr11:1049460 | HCH6g0174 | HCH-Chr6:2285486 | 3.50E-26 | transposed | |
| HCH4g1388 | HCH-Chr4:10190319 | HCH6g0174 | HCH-Chr6:2285486 | 1.40E-128 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH6g0174 | K15109 | - | csv:101222749 | 536.954 |