Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0199 ATGGAGAGCATCAAGGATCCATTTAGGGGGATTGTGAATGATATCAGAGGAAGAGCATCCTGTTATAAGCAAGATTGGATTGGTGGCCGACTTTCAGGATTTGGGATTTTGGCCCCAACTACCTATATTTTTTTCGCTTCTGCACTCCCTGTCATTGCTTTCGGTGAGCAACTGAGCAGAGATACAGATGGAAGCTTGAGCACAGTTGAAACTTTGGCCTCCACAGCCATATGTGGCATTCTTCATTCCATTCTTGGAGGGCAGCCTCTCTTAATTGTAGGTGTTGCAGAACCCACTATTATTATGTATACGTATTTGTACAATTTTTCCAAGGAAAGAAAAGAAATAGGGAGAGAGCTCTTTTTGGCTTGGGTAGGATGGGTCTGTGTCTGGACAGCTCTATTGCTGTTCCTTCTTGCTATATTCAATGCTTGCAGTCTAATAAGCAGATTTACAAGGATTGCTGGGGAACTTTTTGGCATGTTGATTTCTGTTTTGTTCATTCAAGAAGCTATTAAGGGAGTGGTGAGCGAATTTAAAGTTCCGAAGGCCGAGGATCCAAGCTTGGAGAAGTATCAATTCCATTGGCTTTACTTAAATGGAATACTGGGAGTTATATTTACTCTTGGTCTTCTCGATACTGCTTTGAAGAGCAGAAAGGCAAGGTCATGGTTGTATGGCACAGGCTGGCTGAGAAGTTTCATCGCAGACTATGGAGTTCCTCTCATGGTTCTAGTATGGACTGCACTGTCTTTTAGCGTACCGAGCAATGTTCCCTTTGGAGTTCCTAGAAGACTCAATAGCCCTCTTGTATGGCAATCAACTTCTCTGCACCATTGGACCATCGTCAAGGATATGGGGAAGATACCTCTCATATACATCTTTGCCGCCTTCATTCCTGCTGTGATGATTGCAGGACTCTATTTTTTTGACCATGGTGTTGCTTCTCAGATGGCACAGCAAAAGGAATTCAATCTAAAGAATCCTTCTGCTTACCACTATGACATCCTGTTGCTGGGATTTATGACTTTGCTTTGCGGGTTGATCGGGCTTCCTCCATCAAATGGGGTTTTGCCACAGTCTCCTATGCACACCAAGTGCCTTGCAGTTCTCAAGAGGCGTTTGATCCGAAAGAAGATGGTAAAAAGTGCTCAGGAAAGCATAAAAAAGAAAGCCAGCGATGCTGAAATATATGGCAAAATGCAAGCTGTGTTCATGGAAATGGACAGCAGCCCAGTTATGTCATCGGTAGTCAAAGAGCTTGAGGATTTGAAGAAGGCAGTTATGGAAGGCAACAATAAAGATAAAAATGCAAATGGTTCATTTGATCCTGAGAAGCACATTGATGCTTTTATTCCCGTCCGAGTAAACGAGCAAAGATTGAGCAATCTGCTGCAGTCACTCCTGGTGGCAGCATCAATATTTGCTATACCAGCAATTAAGAAAATCCCAACATCTGTTCTCTGGGGATACTTTGCATACATGGCCATAGACAGTCTTCCTGGAAACCAATTCTGGGAAAGGATTTTACTCTTCTTCATAATGCCTAGTCGACGATACAAGGTCCTAGAAGGTGTTCATGCTTCCTTTGTGGAGTCTGTGCCATTTAAATACATAGGCTTATTCACTCTGTTTCAATTTGTATATTTCCTCATTTGTTTTGGAGTGACTTGGATCCCTATAGCTGGAGTCTTGTTTCCCTTGCCTTTCTTTCTTCTCATCTGCATAAGAGAGCACATCCTTCCCAAGCTACTTCAACCTCATTATTTGCAAGAGCTTGATGCAGCCGAGTACGAAGAAATAACCGGTGCCACAGGACTCTCGCATAGTTTTTCTTTTAAGGAAAAGGATACTGCTGGATCTGGAATAGTGAACAATGGAGATGAAGTATGTGATGCTGAAATACTAGATGAGTTGACAACTAATAGAGGGGAATTGAAGGTTAGAACCGTAAGCTTCAATGACGATAGACGTGATCAGGTTTATCCTGATCAAGCCATTGTAAAAGATTAA 2013 42.42 MESIKDPFRGIVNDIRGRASCYKQDWIGGRLSGFGILAPTTYIFFASALPVIAFGEQLSRDTDGSLSTVETLASTAICGILHSILGGQPLLIVGVAEPTIIMYTYLYNFSKERKEIGRELFLAWVGWVCVWTALLLFLLAIFNACSLISRFTRIAGELFGMLISVLFIQEAIKGVVSEFKVPKAEDPSLEKYQFHWLYLNGILGVIFTLGLLDTALKSRKARSWLYGTGWLRSFIADYGVPLMVLVWTALSFSVPSNVPFGVPRRLNSPLVWQSTSLHHWTIVKDMGKIPLIYIFAAFIPAVMIAGLYFFDHGVASQMAQQKEFNLKNPSAYHYDILLLGFMTLLCGLIGLPPSNGVLPQSPMHTKCLAVLKRRLIRKKMVKSAQESIKKKASDAEIYGKMQAVFMEMDSSPVMSSVVKELEDLKKAVMEGNNKDKNANGSFDPEKHIDAFIPVRVNEQRLSNLLQSLLVAASIFAIPAIKKIPTSVLWGYFAYMAIDSLPGNQFWERILLFFIMPSRRYKVLEGVHASFVESVPFKYIGLFTLFQFVYFLICFGVTWIPIAGVLFPLPFFLLICIREHILPKLLQPHYLQELDAAEYEEITGATGLSHSFSFKEKDTAGSGIVNNGDEVCDAEILDELTTNRGELKVRTVSFNDDRRDQVYPDQAIVKD 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2666437 2671213 + evm.model.ptg000003l.1593 HCH6g0199 545693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0199 670 PANTHER ANION EXCHANGE PROTEIN 4 643 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
HCH6g0199 670 Pfam HCO3- transporter integral membrane domain 7 183 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH6g0199 670 Pfam HCO3- transporter integral membrane domain 454 596 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH6g0199 670 Pfam HCO3- transporter integral membrane domain 203 373 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0342 HCH-Chr3:2188633 HCH6g0199 HCH-Chr6:2666437 5.00E-222 transposed
HCH6g0432 HCH-Chr6:11121183 HCH6g0199 HCH-Chr6:2666437 1.60E-223 transposed
HCH4g0416 HCH-Chr4:2710035 HCH6g0199 HCH-Chr6:2666437 3.80E-280 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0199 K24194 - csv:101210964 1097.42