Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0220 ATGGCTAAACTTAAGAAGTATAGAGGTGTGAGGCAACGCCGTTGGGGGTCATGGGTCTCTGAGATTCGTCATCCTCTGTTGAAAAGAAGGGTTTGGTTAGGGACTTTTGATACAGCTGAAGAGGCAGCGAGAGCCTATGATGAAGCAGCCATTTTGATGAGTGGTAGGAATGCTAAAATCAACTTTCCGGTGCTAAAAAACCAAGCGGTACACGGTGTCAGCGACGACACCGTGCCGTCTCCCTCATCAGCCACGCTCTCGGCCATTCTCAATGCCAAGCTTCGCAAGTGTTGCAAATCTCCATGTCCTTCCCTTACCTGCCTTCGCCTCGACACGGAGAATTCTCGCCTCGGTGTCTGGCAAAGGCGGGCGGGGAATCGACTAAGCGACTCGAATTGGGTGATGATGGTTGAGCTTGAAAACCAAAAGAAGATGAAGATGATAAAGAAGAAGCTCATCAGTGGATCAGAATTGGAAGAGGACTCTCCGGAAAAGGATATGAGAGATCATTTAAAATCAGGAGGAGAGTTGAGTTGGGAGGAGGAAGAAAGGGTGGCTTTACAAATGATTGAAGAACTCATGAATAGTTGA 591 47.88 MAKLKKYRGVRQRRWGSWVSEIRHPLLKRRVWLGTFDTAEEAARAYDEAAILMSGRNAKINFPVLKNQAVHGVSDDTVPSPSSATLSAILNAKLRKCCKSPCPSLTCLRLDTENSRLGVWQRRAGNRLSDSNWVMMVELENQKKMKMIKKKLISGSELEEDSPEKDMRDHLKSGGELSWEEEERVALQMIEELMNS 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2884158 2884871 - evm.model.ptg000003l.1572 HCH6g0220 545714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0220 196 CDD AP2 5 65 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0220 196 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0220 196 MobiDBLite consensus disorder prediction 154 176 - -
HCH6g0220 196 FunFam Ethylene-responsive transcription factor 2 5 64 - -
HCH6g0220 196 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 120 IPR050913 -
HCH6g0220 196 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0220 196 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0220 196 Pfam AP2 domain 6 53 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0220 196 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH6g0220 196 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
HCH6g0220 196 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1272 HCH-Chr4:8772694 HCH6g0220 HCH-Chr6:2884158 3.20E-24 dispersed
HCH6g0220 HCH-Chr6:2884158 HCH6g0276 HCH-Chr6:3882899 4.00E-20 dispersed
HCH10g0411 HCH-Chr10:3283636 HCH6g0220 HCH-Chr6:2884158 1.10E-51 wgd
HCH12g0362 HCH-Chr12:2069438 HCH6g0220 HCH-Chr6:2884158 4.10E-52 wgd
HCH14g0278 HCH-Chr14:30963153 HCH6g0220 HCH-Chr6:2884158 2.40E-17 wgd
HCH6g0220 HCH-Chr6:2884158 HCH8g0837 HCH-Chr8:44874741 7.50E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33682 PF00847 AP2 2.20E-14 CL0081 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0220 - - - 0.0