Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0221 ATGGCTCATATTCTTCTCCATGGAACCCTTCATGTCACCATTTATGAAGTGGATAAGCTGCATTCTGGACATAATATCTTCCAGAAGATCATAGGAAACGTAGAGGAGGCAGTTGGTTTTGGTAGAGGAGTTCCGAAGCTATATGCAACCGTTGATCTAGAAAAAGCAAGAGTTGGAAGAACAAGAAAATTAGAAAAACAAGATTCAAACCCAAAATGGTACGAGACTTTTCATATATACTGCGCTCACATGGCTGCAAACATTATCTTCACTGTCAAAGATGACAACCCCATTGGTGCAACTCTCATAGGAAGGGCATATGTCCCTGTCCAAGAAATCATCAATGGTGAAGAAGTTGATAAATGGGTTCTGATCTTGGACAAAGACAAAAATCCTATTCGTGGGGAGCCTAAGATTCATGTCAAGTTACAGTACTTTGACGTCTCGAAAGACCGAAACTGGGGTCGCGGAATCCGAAGTTCCAAGTTTCCTGGAGTTCCTTACACTTATTTCTCTCAGAGACAAGGTTGTAAGGTTACTTTGTATCAAGATGCTCATGTTCCTGACAATTTTATACCAAGAATTCCTCTTGCTGGAGGCAAATTTTATGAGCCTCATAGATGTTGGGAAGACATTTTCGATGCTATAACGAATGCGAAACATTTGATCTATATCACTGGATGGTCTGTTTATACTCAGATTTCCTTGGTGAGAGATAGGAGAAGGCCAAAGCCTGGTGGAGATATAATGCTTGGTGAGTTGCTTAAGAAAAAAGCAAGTGAAGGAGTTAGAGTTCTCATGCTTATTTGGAATGATACTACTTCTGTTCCTATATTGAAAGAAGATGGATTGATGGCTACTCATGATGAAGATACTCAAAATTACTTTGCTAACACTGATGTGCATTGCGTGTTATGTCCTCGCGATCCCGACGATGGTGCGAATATAATTCAGGATATAGCTATCGGGGCGATGTTCACTCACCACCAGAAGATTGTTGTCGTGGATAGTGCATTGCCGAGTGGAGATTCAGAAAGGAAGAGGATTGTGAGTTTTGTTGGGGGTATTGATCTTTGTGATGGTAGATATGATTCCCCGTTTCATTCCCTTTTCAGGACATTGGATTCTGCTCACCACGATGATTTCCATCAGCCAAACTTCAAAGGGACTTCGATAAACAAAGGCGGTCCGAGAGAGCCTTGGCACGATATCCATTCACGGCTCGAAGGACCTGTCGCTTGGGATGTTTTGTATAATTTTGAACAGAGGTGGAGAAAGCAAGGTGGTAAGGATTTGCTTCTGAATCTGAGGGATCTAGAAGACAACTTCATCACCCCATCTCCTGTCACCTTCCCTGATGACCATGAAAGTTGGAATGCACAAGTATTCAGATCAATTGATGGTGGGGCTGCTTTTGGTTTCCCTGACAAACCTGAAGATGCAGCCAAAGCTGGGCTAATTAGTGGAAAGGATAAGACTATCGATCGAAGCATTCAGGACGCTTATATTAATGCTATCCGACGAGCGAAGAACTTCATTTACATCGAAAATCAGTATTTCCTTGGAAGTTCATTTGAATGGAAAGGTGATGATATAAAACCAGAGGAGATCAATGCCTTGCATTTGATTCCAAAGGAACTCTCCCTTAAAATTGTTAGTAAGATTGAAGCTGGAGAAAGATTCACTGTCTATGTTGTTATTCCTATGTGGCCAGAAGGATATCCTGAAGGAGGAACAGTTCAGGCAATACTAGATTGGCAAAGGAGGACAATGGAATTGATGTATAAAGATATCATTCAAGCTCTAAGAGCTAATGGCATTGAAGAGGATCCTAGAAACTATCTGACGTTTTTTTGCGTCGGCAACCGTGAAGTCAAGAAACCGGGAGAATATGAACCATCAGAATCACCAGACCAGGATTCAGATTACTTGAGAGCCCAACAAGCAAGGCGTTTCATGATTTATGTTCATGCCAAGATGATGATTGTTGATGATGAATACATAATTGTTGGATCTGCCAACATCAACCAAAGATCAATGGATGGCGCCCGAGACTCGGAGATCGCTATGGGAGCTTTCCAACCATATCATCTATCAACTCGAGTACCGGCTCGAGGCCAAGTCCACGGCTTTCGTTTGGCGCTATGGTATGAACATATGGGCATGCTTCATGAGTCCTTCTTGCAGCCAGAGAGTGAGGAGTGTGTCAGGAAAGTGAACCAACTTGCTGAACAATATTGGGATCTATATTCAAGTGAAACTCTTGAACAAGACCTTCCCGGTCACTTGCTTCGTTATCCGATCGCCATTTCCGGTGATGGCGACATTACACATCTTCCAGGATTTGAGTGCTTCCCTGATACAAAGGCTCCAGTTCTTGGTTCAAAATCTGATTATATCCCTCCAATTCTCACTACTTGA 2421 42.34 MAHILLHGTLHVTIYEVDKLHSGHNIFQKIIGNVEEAVGFGRGVPKLYATVDLEKARVGRTRKLEKQDSNPKWYETFHIYCAHMAANIIFTVKDDNPIGATLIGRAYVPVQEIINGEEVDKWVLILDKDKNPIRGEPKIHVKLQYFDVSKDRNWGRGIRSSKFPGVPYTYFSQRQGCKVTLYQDAHVPDNFIPRIPLAGGKFYEPHRCWEDIFDAITNAKHLIYITGWSVYTQISLVRDRRRPKPGGDIMLGELLKKKASEGVRVLMLIWNDTTSVPILKEDGLMATHDEDTQNYFANTDVHCVLCPRDPDDGANIIQDIAIGAMFTHHQKIVVVDSALPSGDSERKRIVSFVGGIDLCDGRYDSPFHSLFRTLDSAHHDDFHQPNFKGTSINKGGPREPWHDIHSRLEGPVAWDVLYNFEQRWRKQGGKDLLLNLRDLEDNFITPSPVTFPDDHESWNAQVFRSIDGGAAFGFPDKPEDAAKAGLISGKDKTIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFEWKGDDIKPEEINALHLIPKELSLKIVSKIEAGERFTVYVVIPMWPEGYPEGGTVQAILDWQRRTMELMYKDIIQALRANGIEEDPRNYLTFFCVGNREVKKPGEYEPSESPDQDSDYLRAQQARRFMIYVHAKMMIVDDEYIIVGSANINQRSMDGARDSEIAMGAFQPYHLSTRVPARGQVHGFRLALWYEHMGMLHESFLQPESEECVRKVNQLAEQYWDLYSSETLEQDLPGHLLRYPIAISGDGDITHLPGFECFPDTKAPVLGSKSDYIPPILTT 806
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2927551 2931976 + evm.model.ptg000003l.1571 HCH6g0221 545715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0221 806 Gene3D C2 domain 6 154 IPR035892 -
HCH6g0221 806 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 652 679 IPR001736 GO:0003824(InterPro)
HCH6g0221 806 CDD C2_plant_PLD 2 146 - -
HCH6g0221 806 SUPERFAMILY Phospholipase D/nuclease 150 437 - -
HCH6g0221 806 Gene3D Endonuclease Chain A 474 692 - -
HCH6g0221 806 PIRSF PLD_plant 1 806 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
HCH6g0221 806 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 148 IPR035892 -
HCH6g0221 806 FunFam Phospholipase D 465 698 - -
HCH6g0221 806 SMART pld_4 324 362 IPR001736 GO:0003824(InterPro)
HCH6g0221 806 SMART pld_4 652 679 IPR001736 GO:0003824(InterPro)
HCH6g0221 806 Pfam Phospholipase D C terminal 725 796 IPR024632 -
HCH6g0221 806 SMART C2_3c 9 122 IPR000008 -
HCH6g0221 806 Gene3D Endonuclease Chain A 200 441 - -
HCH6g0221 806 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 324 362 IPR001736 GO:0003824(InterPro)
HCH6g0221 806 Pfam C2 domain 9 123 IPR000008 -
HCH6g0221 806 PANTHER PHOSPHOLIPASE D 5 793 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
HCH6g0221 806 FunFam Phospholipase D delta 199 443 - -
HCH6g0221 806 Pfam Phospholipase D Active site motif 654 679 IPR001736 GO:0003824(InterPro)
HCH6g0221 806 Pfam Phospholipase D Active site motif 325 362 IPR001736 GO:0003824(InterPro)
HCH6g0221 806 ProSiteProfiles C2 domain profile. 1 123 IPR000008 -
HCH6g0221 806 SUPERFAMILY Phospholipase D/nuclease 498 736 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0115 HCH-Chr6:1450375 HCH6g0221 HCH-Chr6:2927551 1.30E-172 dispersed
HCH6g0221 HCH-Chr6:2927551 HCH6g0948 HCH-Chr6:44300287 2.00E-195 dispersed
HCH4g0435 HCH-Chr4:2846438 HCH6g0221 HCH-Chr6:2927551 0.00E+00 wgd
HCH4g1310 HCH-Chr4:9179378 HCH6g0221 HCH-Chr6:2927551 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0221 K01115 - csv:101215246 1478.38