Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0245 ATGGCCTTTCGCCCTATGTTTTGCTGTGGAGTTGGTTCTCATCGGAAAGAAAGAGGGAAGAAACAGCAATCTTGGAGGGTCTTTTCATTGAAGGAATTACATTCAGCCACAAATAATTTTAATTATGATAACAAGCTTGGAGAAGGAGGATTTGGTAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCAGTCAAGAGGTTGAAGGTTTGGAGCACCAAAGCAGATATGGAATTTTCTGTGGAAGTTGAGATACTGGCAAGAGTTAGGCACACGAACCTATTGAGTTTGCGTGGCTACTGTGCCGAAGGCCAAGAGCGTTTGATTGTATATGACTACATGCCAAATCTAAGTTTACTCTCTCATCTTCATGGACAGCACTCAGCAGAATGCCTTCTTGATTGGAAACGTCGTATGAAAATTGTTATCGGGTCTGCTGAAGGAATTTCTTATCTTCACCATCAAGCGACTCCCCATATTATTCATCGAGACATCAAAGCTAGTAACGTTTTGCTGGATCCAGATTTCCAAGCTCGCGTAGCTGACTTTGGATTTGCAAAACTTATCCCTGATGGTGCAACACATGTAACTACAAGAGTCAAGGGTACTCTCGGATACCTTGCTCCTGAATACGCTATGTTAGGAAAAGCATCAGAGAGTTGTGATGTCTACAGCTTTGGTATTCTACTGCTAGAGCTTGCCACCGGCAAGAGACCTCTTGAGAAGTTGAGTGCGACATTGAAACGCACAATTACAGACTGGGCTCTGCCATTGGTAGTTGAGAAAAAGATTGAAGAACTTGCAGACCCCAAGCTAAATGGAGAATATGATGCCGAAGAGCTGAAAAGAGTTGTCCTTGTCGCACTCACTTGCACCCACTCGCAGCCGGAGAAAAGACCTACCATGCTTGAGGTGGTAGAGCTACTAAAAGGAGAATCAAAAGACAAGTTATCCAAACTAGAAGATGATGAGTTGTTTAAGAGCCATAAAGCAGCAGTACAAGTTAACGAGACACCAGTCGGTGAAGATAGCTTGGACTTCATATCGCCAGAAAGGGATTCGAAAGACGAGTTGAAAGATGATTCAACCCAAAATCCACATGAAAGCTGA 1116 43.37 MAFRPMFCCGVGSHRKERGKKQQSWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSTKADMEFSVEVEILARVRHTNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGQHSAECLLDWKRRMKIVIGSAEGISYLHHQATPHIIHRDIKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKRPLEKLSATLKRTITDWALPLVVEKKIEELADPKLNGEYDAEELKRVVLVALTCTHSQPEKRPTMLEVVELLKGESKDKLSKLEDDELFKSHKAAVQVNETPVGEDSLDFISPERDSKDELKDDSTQNPHES 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3531102 3533807 + evm.model.ptg000003l.1547 HCH6g0245 545739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0245 371 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0245 371 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
HCH6g0245 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0245 371 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
HCH6g0245 371 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
HCH6g0245 371 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
HCH6g0245 371 SUPERFAMILY Protein kinase-like (PK-like) 22 311 IPR011009 -
HCH6g0245 371 CDD STKc_IRAK 46 313 - -
HCH6g0245 371 MobiDBLite consensus disorder prediction 334 371 - -
HCH6g0245 371 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
HCH6g0245 371 SMART serkin_6 40 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0245 371 MobiDBLite consensus disorder prediction 348 371 - -
HCH6g0245 371 Pfam Protein kinase domain 41 309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0245 371 PANTHER OS01G0750732 PROTEIN 21 326 IPR050885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0953 HCH-Chr4:6123489 HCH6g0245 HCH-Chr6:3531102 2.10E-70 dispersed
HCH6g0245 HCH-Chr6:3531102 HCH8g1000 HCH-Chr8:46079452 1.60E-115 dispersed
HCH8g1001 HCH-Chr8:46084649 HCH6g0245 HCH-Chr6:3531102 2.00E-49 dispersed
HCH3g0495 HCH-Chr3:3193458 HCH6g0245 HCH-Chr6:3531102 1.60E-56 transposed
HCH14g0290 HCH-Chr14:31355245 HCH6g0245 HCH-Chr6:3531102 2.50E-71 wgd
HCH6g0245 HCH-Chr6:3531102 HCH8g0872 HCH-Chr8:45174802 4.20E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81549 PF00069 Pkinase 1.30E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0245 - - - 0.0