Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0265 ATGCCTAAAGTGGTTTTGAAAGCTGGAAGTAGGCCTCCTTGGGTAGGCTTAGCAGCTGCAGTTTGGGTTCAAATAGCTGCTGCATCTTCCGCTAACTTTGTTCTTTATTCTCATTTACTGAAATCTGTGTTGGGTTTTAATCAGCAGCAGCTGACAATATTGGGAGTGGCTAATGATATTGGTGAAAGTGTGGGATTGCTTCCTGGACTTGCTTGTAATAAATTTCCACCATGGGTTGTTCTTTTGATTGGTACTGGTTTTTGTTTTGTGGGTTATGGTGGTATTTGGCTTGCTGTTAGCCAGACTGTCTCTAATTTGCCTTTTTGGTTGTTGTGGGTCACACATTGTATTGCTACAAATAGCAATGCATGGTTTGGAACAGCCGTGCTTGTAACCAACATGAGGAACTTCCCTCTTAGTAGGGGTACTGTTGCTGGCATTCTAAAAGGTTATGTTGGGCTTAGTGCAGCCGTGTACACGGTGATATACAGCATGGTGCTTAAAAAGTCGGCTTTGAATCTACTCTTGTTTCTTGCAATTGGGATACCTATTTTGTGCCTAGCGATGATGTACTTTGTTCGGCCTTGTACCCCAGCTTCTGGAGAAGATTCTTCAGAGCATGTCCACTTTCTTTTCACTCAAGCTGCTAGTGTTTTTCTAGCTCTCTATCTTGTCTCAACCACCATTATAGAAACAACATCATCCCCTAGTAATGCAGTTTCATACACTCTAGTTGCCATAATGGTTATCCTTTTAATGGCCCCTCTTGCAATTCCCATAAAAATGACAATTTTTTCTTCAAAGACGAAAAGACTTGGCCCTCGAGTTGACTCTGCGGATCCCTTAACTTCCGGAGAAGGTGAATCTACCCAAATAGAACCTTTATTAACACCATCATCCTCATCTGCAAATCTTGGAAGTTTCTATGAGAATGATGATTCATCAGATGTTGAAACACTTCTTGCTGTGGGAGAGGGGGCTATTAAGAAGAAGAGAAGGCCTAAAAGAGGGGAAGATTTCAGGCTGCGTGAGGCTATAATCAAAGCCGATTTCTGGCTGCTTTGGTTCTTGTACTTCCTTGGGGTTGGTCCAGGTGTTACAGTTCTCAACAATTTGTCTCAAATCGGGATTGCATTAGGTGTTAATGACACATCATTACTTTTGGCTCTCTTCAGTTTCTGCAATTTTGTTGGTCGACTAGGCTCGGGTGTTATTTCTGAACACTTTGTCAGGTCAAGAATGATACCACGCTCGCTGTGGATGATGTGCTCACTAATAGTCATGGTTATAGCATTCCTTCTGTATGCATCTGCCCTCTCTGGAACACTCTATGCTGCCACTGCCTTGATGGGAATCAGCTATGGGGGTTTATATTCTATGATGGTCCCCATCGCATCCGAGATTTTCGGCCTTAAAAATTTTGGAGTCATCTTCAATTTCATGCAGCTGGGCAATCCAATTGGTGCAGTCCTTTTCTCAGTTCTGCTTGCTAGTACTTTATATGACATTGAAGCTGTTAAGCAAGGTTCAAAAACCTGTATAGGCGCCCACTGCTTCAGGCTTACTTTCTTCATTCTTTCAGGCGTCGCCGGTTTAGGTTCGATCTTGAGCATAATTTTGACTATTAGATTAAGGCCAGTCTATCATATGCTCTACTCCGGTGGCTCGTTCCGCTTGCCTCAAACTTCAGGCCATTGA 1698 42.93 MPKVVLKAGSRPPWVGLAAAVWVQIAAASSANFVLYSHLLKSVLGFNQQQLTILGVANDIGESVGLLPGLACNKFPPWVVLLIGTGFCFVGYGGIWLAVSQTVSNLPFWLLWVTHCIATNSNAWFGTAVLVTNMRNFPLSRGTVAGILKGYVGLSAAVYTVIYSMVLKKSALNLLLFLAIGIPILCLAMMYFVRPCTPASGEDSSEHVHFLFTQAASVFLALYLVSTTIIETTSSPSNAVSYTLVAIMVILLMAPLAIPIKMTIFSSKTKRLGPRVDSADPLTSGEGESTQIEPLLTPSSSSANLGSFYENDDSSDVETLLAVGEGAIKKKRRPKRGEDFRLREAIIKADFWLLWFLYFLGVGPGVTVLNNLSQIGIALGVNDTSLLLALFSFCNFVGRLGSGVISEHFVRSRMIPRSLWMMCSLIVMVIAFLLYASALSGTLYAATALMGISYGGLYSMMVPIASEIFGLKNFGVIFNFMQLGNPIGAVLFSVLLASTLYDIEAVKQGSKTCIGAHCFRLTFFILSGVAGLGSILSIILTIRLRPVYHMLYSGGSFRLPQTSGH 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3768863 3772992 - evm.model.ptg000003l.1527 HCH6g0265 545759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0265 565 CDD MFS_Mch1p_like 12 533 - -
HCH6g0265 565 Pfam Major Facilitator Superfamily 359 543 IPR011701 GO:0022857(InterPro)|GO:0055085(InterPro)
HCH6g0265 565 Pfam Nodulin-like 13 260 IPR010658 -
HCH6g0265 565 SUPERFAMILY MFS general substrate transporter 332 546 IPR036259 -
HCH6g0265 565 MobiDBLite consensus disorder prediction 283 301 - -
HCH6g0265 565 Gene3D MFS general substrate transporter like domains 6 277 IPR036259 -
HCH6g0265 565 SUPERFAMILY MFS general substrate transporter 10 197 IPR036259 -
HCH6g0265 565 Gene3D MFS general substrate transporter like domains 344 549 IPR036259 -
HCH6g0265 565 MobiDBLite consensus disorder prediction 272 301 - -
HCH6g0265 565 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 13 548 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0945 HCH-Chr13:12917262 HCH6g0265 HCH-Chr6:3768863 9.50E-89 dispersed
HCH6g0265 HCH-Chr6:3768863 HCH7g0478 HCH-Chr7:3626169 2.10E-93 dispersed
HCH6g0265 HCH-Chr6:3768863 HCH2g0539 HCH-Chr2:49198931 9.00E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0265 - - - 0.0