Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0285 ATGGAGACTAGTGAGGAAGCTCCATCAGCACCAGCAACACCAGGGACTCCAAGAGCTCCTCTGTTTGGAAGTGGGAATGGAAGAAGATGTCTTCTCAAAAGCTGCATGTCCTTCAATACTCATGATTGGGCCAATGTGGAAGGAGGCTTATCTAAACTCTCTTGTTCATTGTCACCCCTTCCTATCTCACTTGCAAGAAAGGTAGGAGCAGAGTTCATAGGGACTCTAATACTGATATTTGGTGGAACAGCGGCTGCCATTGTTAACCAAAAGACGAGAGGAAGTGAAACGCTGATAGGCCTTGCTTCCTCCACAGGCCTTGCTGTGATGATTGTAATCTTATCTACTGGTCACATCTCAGGAGCCCATCTCAACCCTGCCGTCACCATTGCTTTTGCTGCTCTCAACCACTTTCCATGGAAACATGTACCAGTGTATATTGGAGCTCAAATATTGGCATCTTTGAGTGCTTCATTTGCATTAAAAGGGATTTTTCATCCATCAATGGATGGGGGAGTTACTGTTCCTTCAGGAGGATGTGCTCAAGCTTTTGCTCTGGAATTTATCATCAGCTTCAACCTCATGTTTGTGATCACTGCAGTGGCCACTGATACTAGAGCTGTGGGGGAGCTGGCGGGAATCACGGTGGGAGCAACAGTGATGCTCAACGTACTCATCGCCGGAGAAACAACTGGAGCTTCAATGAATCCAGTGAGAACACTTGGGCCAGCCATAGCTGCAAACAACTTTAAAGCCATATGGATTTACCTTACAGCTCCCATACTAGGAACATTGTGTGGGGCTGGATTCTATTCTGCAGTAAAGTTGCCATTGCCAGATGAAGATGGTGATGCACATGAAAAGCCTTCTGCACCAAGGAGCTTCCGAAGATGA 894 46.64 METSEEAPSAPATPGTPRAPLFGSGNGRRCLLKSCMSFNTHDWANVEGGLSKLSCSLSPLPISLARKVGAEFIGTLILIFGGTAAAIVNQKTRGSETLIGLASSTGLAVMIVILSTGHISGAHLNPAVTIAFAALNHFPWKHVPVYIGAQILASLSASFALKGIFHPSMDGGVTVPSGGCAQAFALEFIISFNLMFVITAVATDTRAVGELAGITVGATVMLNVLIAGETTGASMNPVRTLGPAIAANNFKAIWIYLTAPILGTLCGAGFYSAVKLPLPDEDGDAHEKPSAPRSFRR 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3991730 3995310 - evm.model.ptg000003l.1507 HCH6g0285 545779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0285 297 PRINTS Major intrinsic protein family signature 105 129 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0285 297 PRINTS Major intrinsic protein family signature 254 274 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0285 297 PRINTS Major intrinsic protein family signature 142 161 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0285 297 PRINTS Major intrinsic protein family signature 66 85 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0285 297 PRINTS Major intrinsic protein family signature 186 204 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0285 297 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0285 297 FunFam Aquaporin NIP2-1 54 287 - -
HCH6g0285 297 MobiDBLite consensus disorder prediction 1 21 - -
HCH6g0285 297 SUPERFAMILY Aquaporin-like 62 278 IPR023271 -
HCH6g0285 297 ProSitePatterns MIP family signature. 123 131 IPR022357 -
HCH6g0285 297 Pfam Major intrinsic protein 63 271 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0285 297 Gene3D Glycerol uptake facilitator protein. 58 284 IPR023271 -
HCH6g0285 297 PANTHER AQUAPORIN NIP2-1 61 277 IPR034294 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0599 HCH-Chr5:4136146 HCH6g0285 HCH-Chr6:3991730 6.80E-88 dispersed
HCH6g0285 HCH-Chr6:3991730 HCH6g0546 HCH-Chr6:30740994 9.30E-61 dispersed
HCH6g0285 HCH-Chr6:3991730 HCH9g0227 HCH-Chr9:1349192 1.20E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0285 K09874 - rcu:8259747 450.284