Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0287 | ATGCCGATTGACACCTCAGCATTTTCCGGCCAAACTGTGTGCGTCACCGGCGCCGGAGGCTTCATTGCTTCCTGGCTTGTAAAACTTCTCCTCCAGAAGGGTTACTCTGTTAGAGGAACTGTCAGAAACCCAGATGATCAGAAGAATGGTCATTTGAAAGAGCTAGATGGAGCAAAAGAAAGGTTAACTTTGTTCAGTGCCGATCTTCTCGATTTCGAGAGCTTGAAAGAAGCTATTAATGGATGCGACGGCGTTTTCCATACAGCATCTCCGGTGACCGATGACCCAGACAAGGTGGAGCAGGCTATAATTGGTACAAAGAATGTCATAGCCGCTGCCGCAGAAGCCAAAGTTCGGCGTGTGGTGTTCACGTCGTCGATCGGTACCGTCTATATGAACCCTAACCGGAGCCCCGACACGGTGGTGGATGAGTCTTGCTGGAGCGACCTTGAGTTTTGCAAGAACACCAAGAACTGGTATTGCTACGCGAAGACGGTGGCGGAGCAGACGGCGTGGGCGATGGCGGAGGAGAAAGGGGTGGATCTAGTGGTGTTGAACCCCATGTTGGTGTTGGGACCAATGCTGCAAGGAACAGTAAATGCAAGTGTGGTTCATATAATGAAGTATTTAACAGGATCAGCAAAGACTTATGTTAATGCAGTTCAAGGCTATGTGGATGTCAAAGATGTTGCAAAAGCTCATCTTTTGGTTTATGAGACTCCTTCTGCTTCTGGAAGATATATTTGTGCTGAAAGCATGCTTCATCGTGGAGAATTGGTTGAGATTTTGGCTAAATTCTTCCCTGAGTATCCAATCCCTACCAAGTGCTCGGATGAGGTGAATCCCAGGAAGAAACCCTACAAATACAGTGTTGAAAAGATCAAGGCATTGGGAATGGAATTCACACCAATGAAGCAATGTCTTTATGAAACTGTCAAGAGCTTACAAGAGAATGGTCATCTTCCACTTCCTTCCCAGCAGCCAAACCAACAAGATTAA | 999 | 46.85 | MPIDTSAFSGQTVCVTGAGGFIASWLVKLLLQKGYSVRGTVRNPDDQKNGHLKELDGAKERLTLFSADLLDFESLKEAINGCDGVFHTASPVTDDPDKVEQAIIGTKNVIAAAAEAKVRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLEFCKNTKNWYCYAKTVAEQTAWAMAEEKGVDLVVLNPMLVLGPMLQGTVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICAESMLHRGELVEILAKFFPEYPIPTKCSDEVNPRKKPYKYSVEKIKALGMEFTPMKQCLYETVKSLQENGHLPLPSQQPNQQD | 332 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4062714 | 4066381 | + | evm.model.ptg000003l.1505 | HCH6g0287 | 545781 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0287 | 332 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 5 | 316 | IPR036291 | - | |
| HCH6g0287 | 332 | PANTHER | NAD DEPENDENT EPIMERASE/DEHYDRATASE | 12 | 314 | IPR050425 | GO:0016616(PANTHER) | |
| HCH6g0287 | 332 | FunFam | Cinnamoyl-CoA reductase 1 | 4 | 332 | - | - | |
| HCH6g0287 | 332 | CDD | FR_SDR_e | 13 | 298 | - | - | |
| HCH6g0287 | 332 | Pfam | NAD dependent epimerase/dehydratase family | 13 | 244 | IPR001509 | - | |
| HCH6g0287 | 332 | Gene3D | - | 4 | 331 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g0287 | HCH-Chr6:4062714 | HCH6g0289 | HCH-Chr6:4083619 | 9.10E-166 | dispersed | |
| HCH6g0287 | HCH-Chr6:4062714 | HCH6g0288 | HCH-Chr6:4073912 | 1.10E-168 | tandem | |
| HCH2g0630 | HCH-Chr2:50113961 | HCH6g0287 | HCH-Chr6:4062714 | 9.30E-62 | transposed | |
| HCH6g0488 | HCH-Chr6:17091363 | HCH6g0287 | HCH-Chr6:4062714 | 2.00E-85 | transposed | |
| HCH6g0489 | HCH-Chr6:17103923 | HCH6g0287 | HCH-Chr6:4062714 | 1.50E-37 | transposed | |
| HCH12g0178 | HCH-Chr12:967218 | HCH6g0287 | HCH-Chr6:4062714 | 8.00E-47 | transposed | |
| HCH4g1266 | HCH-Chr4:8712495 | HCH6g0287 | HCH-Chr6:4062714 | 9.40E-150 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH6g0287 | K09753 | - | csv:116401668 | 589.726 |