Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0288 ATGCCGGCCATTGATATCTCTACAAGTTCCGGCGAGACCGTGTGCGTCACCGGTGCCGGTGGCTTCATTGCTTCTTGGCTTGTAAAACTCCTCCTTGAAAAAGGTTACAGGGTTAGAGGAACTGTGAGAAACTCAAATGATGAAAAGAATGCTCATTTGATGGATTTGGAAGGAGCCAAAGAGAGATTAACTTTGTTTAGTGCTGATCTTCTTGATTATAAGAGCATCCAAGCCGCCATCTCTGGCTGTCATGGTGTTTTCCACACCGCCTCTCCTGTCACTGATGACCCAGAAAAGGTAGAGCAGGCAATATTGGGGACAAAGAATGTAATAAACGCTGCCGCAGAAGCCAAAGTCCGGCGAGTGGTTTTCACGTCGTCGATCGGTACGGTCTACATGAACCCTAACCGGAGCCCCGACACGGTGGTTGACGAGTCGTGCTGGAGCGATCTAGAGTTCTGCAAGAACACCAAGAACTGGTATTGCTACGCGAAGACGGTGGCGGAGCAGACGGCGTGGGCGGTGGCGGAGGAGAAAGGAGTGGATGTAGTGGTGGTGAACCCCATGTTGGTGTTGGGACCAATGCTGCAAGGAACAGTAAATGCAAGTGTGGTTCATATAATGAAGTATTTAACAGGATCAGCAAAGACTTATGTTAATGCAGTTCAAGGCTATGTGGATGTCAAAGATGTTGCAAAAGCTCATCTTTTGGTTTATGAGACTCCTTCTGCCTCTGGAAGATATATTTGTGTTGAAAGCATGCTTCATCGTGGAGAATTGGTTGAGATTTTGGCTAACTTCTTCCCTGACTATCCTCTTCCTACTAAGTGCTCTGATGAGGTGAATCCGAGGAAGAAACCTTACAAATACAGTGTTGAGAAACTCAAGTCATTGGGAATGAAGTTCACTCCTATGAAGCAATGTCTTTATCAAACTGTCAAGAGCCTCCAAGAGAAGGGTCATCTTCCACTTCCCACTCCACAACAACATTCTTCATGA 999 46.55 MPAIDISTSSGETVCVTGAGGFIASWLVKLLLEKGYRVRGTVRNSNDEKNAHLMDLEGAKERLTLFSADLLDYKSIQAAISGCHGVFHTASPVTDDPEKVEQAILGTKNVINAAAEAKVRRVVFTSSIGTVYMNPNRSPDTVVDESCWSDLEFCKNTKNWYCYAKTVAEQTAWAVAEEKGVDVVVVNPMLVLGPMLQGTVNASVVHIMKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYETPSASGRYICVESMLHRGELVEILANFFPDYPLPTKCSDEVNPRKKPYKYSVEKLKSLGMKFTPMKQCLYQTVKSLQEKGHLPLPTPQQHSS 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4073912 4076785 + evm.model.ptg000003l.1504 HCH6g0288 545782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0288 332 CDD FR_SDR_e 14 299 - -
HCH6g0288 332 Pfam NAD dependent epimerase/dehydratase family 14 245 IPR001509 -
HCH6g0288 332 FunFam Cinnamoyl-CoA reductase 1 5 332 - -
HCH6g0288 332 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 13 315 IPR050425 GO:0016616(PANTHER)
HCH6g0288 332 Gene3D - 4 332 - -
HCH6g0288 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 317 IPR036291 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH2g1362 HCH-Chr2:55503322 HCH6g0288 HCH-Chr6:4073912 1.70E-22 dispersed
HCH6g0288 HCH-Chr6:4073912 HCH6g0488 HCH-Chr6:17091363 1.20E-85 dispersed
HCH6g0287 HCH-Chr6:4062714 HCH6g0288 HCH-Chr6:4073912 1.10E-168 tandem
HCH6g0288 HCH-Chr6:4073912 HCH6g0289 HCH-Chr6:4083619 1.50E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0288 K09753 - csv:116401652 574.704