Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0289 ATGCCAGCCTTTGATATCTCTACAACTTCCGGCGAAACCGTGTGTGTCACCGGCGCCGGCGGCTTCATTGCTTCTTGGCTTGTCAAACTCCTTCTTGAAAAGGGTTACACTGTTAGAGGAACTGTCAGAAACCCAGATGATCAGAAAAATTCTCACTTGAAAGAGTTGGAAGGAGCAAAGGAGAGGTTAACTTTATACAGTGCTGATCTTCTTGATTATGAAAGCCTCAGAGCAGCCATTGTTGGTTGCCATGGAGTTTTCCATACTGCATCTCCTGTCACTGATGATCCAGAAAAGGTGGAGCAGGCCATCATTGGAACAAAGAACGTGCTATCAGCGGCGGCTGAGGCAAAGGTCCGCCGTGTCGTCTTCACATCGTCGATCGGCACGGTGTACATGAACCCCAACCGCCGCCCAGACGCGGTGGTTGATGACTCATGCTGGAGTGATCTTGAATTCTGCAAGAACACCAAGAATTGGTATTGCTACGCGAAGACGGTGGCGGAGCAGACGGCATGGGAGGTGGCGGCGGAGAGCGGGGTGGATCTAGTGGTGGTGAACCCCATGTTGGTGCTGGGACCATTGCTGCAACCAACAGTAAATGCAAGTGTGGTTCATATATTGAAGTATTTGACAGGATCAGCAAAGACTTATGTGAATGCCGTTCAAGGGTATGTAGATGTCAAGGATGTGGCCAAAGCCCACCTTCTTGTTTACGAATCTCCGGCGGCCGCCGGCAGATATATTTGTGCAGAGAGCATGCTCCACCGTGAAGAGTTGGTGGAGATTCTTGCAAACTTATTCCCTCAATACCCTCTTCCCACGAAGTGCTCGGATGAGGTGAACCCCAGGAAGAAACCCTACAAATACAGTGTGGAAAAGCTAAAGGAATTGGGAATGGAATTCACACCAATGAAGCAATGTCTTTATGAAACTGTGAAAAGTCTACAAGAGAATGGTCATCTTCCACTTACCACTCAACAAGAATGA 990 48.69 MPAFDISTTSGETVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDQKNSHLKELEGAKERLTLYSADLLDYESLRAAIVGCHGVFHTASPVTDDPEKVEQAIIGTKNVLSAAAEAKVRRVVFTSSIGTVYMNPNRRPDAVVDDSCWSDLEFCKNTKNWYCYAKTVAEQTAWEVAAESGVDLVVVNPMLVLGPLLQPTVNASVVHILKYLTGSAKTYVNAVQGYVDVKDVAKAHLLVYESPAAAGRYICAESMLHREELVEILANLFPQYPLPTKCSDEVNPRKKPYKYSVEKLKELGMEFTPMKQCLYETVKSLQENGHLPLTTQQE 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4083619 4085919 + evm.model.ptg000003l.1503 HCH6g0289 545783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0289 329 Gene3D - 4 329 - -
HCH6g0289 329 CDD FR_SDR_e 14 299 - -
HCH6g0289 329 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 13 315 IPR050425 GO:0016616(PANTHER)
HCH6g0289 329 Pfam NAD dependent epimerase/dehydratase family 14 245 IPR001509 -
HCH6g0289 329 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 317 IPR036291 -
HCH6g0289 329 FunFam Cinnamoyl-CoA reductase 1 5 329 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0026 HCH-Chr12:172021 HCH6g0289 HCH-Chr6:4083619 2.60E-77 dispersed
HCH3g1469 HCH-Chr3:52735243 HCH6g0289 HCH-Chr6:4083619 6.00E-69 dispersed
HCH4g1266 HCH-Chr4:8712495 HCH6g0289 HCH-Chr6:4083619 4.00E-148 dispersed
HCH6g0287 HCH-Chr6:4062714 HCH6g0289 HCH-Chr6:4083619 9.10E-166 dispersed
HCH6g0289 HCH-Chr6:4083619 HCH6g0488 HCH-Chr6:17091363 1.30E-79 dispersed
HCH6g0288 HCH-Chr6:4073912 HCH6g0289 HCH-Chr6:4083619 1.50E-168 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0289 K09753 - csv:116401652 577.785