Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0290 | ATGAACAATAAGATGGCTGCTGGAACGAATTCTGGGCAGCCACAATTCATTGCGAGGGCCGGAGATGAAAGCTATTCGCATGCGCCGTTGATCGAGAATTCTGAAACTGATCAGATTGTTGTTTCTGATAAGAAAAGCTGGAAGAACTTATTTTCGTATATGGGACCGGGGTTTCTTGTTTGTATTGCCTATATTGATCCTGGAAATTTTGAAACTGATCTGCAGGCTGGAGCACAGTACAAGTATGGGTTACTTTGGATCATCTTAGTGGCTTCCTGTGCTGCCCTCATCATTCAATCCTTAGCAGCCAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCGGAATACCCCAGGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCTGAAGTTATAGGAACAGCGTTTGCATTGAATATGCTCTTCAAAATTCCTATTTGGTGTGGGGTTCTTCTGACAGGGCTTAGTACTCTATTCCTTCTTGCACTGCAGCAATATGGGATTAGGAAGCTTGAATTCTTGATTGCATTGTTTGTATTGACAATTGCGGTTTGCTTCTTCCTGGAGCTAGGCTATGCAAAGCCTGATGCTGGAGAAGTTCTTTATGGGCTATTTGTCCCTCAACTAAAAGGAAGCGGCGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCGCACAATCTCTTTCTCCACTCTGCTTTGGTGCTCTCTAGGAAAATACCCCGATCTTTTCAGGGCATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTGGCTTTCCTTATAAATGTTTCAATCATTTCTGTAAGTGGTGCTGTTTGCAATGCTCCAGATCTTAATAAAGAGGATCAAATGAACTGCACTGACTTGGACTTGAATAAAGCCTCATTTTTGCTGAGAAATGTTTTGGGTCGGTGGAGTTCAAAACTTTTCGCTGTTGCTTTGTTAGCTTCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGAGGCCATGGGTCAGAAACTTTTTAACCCGAAGCCTAGCAATTGTTCCTAGTCTGATTGTTGCTATCATTGGCGGCTCCTCAGGGGCTGGGCAGTTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTTGTTCCCCTTTTGAAGTTCACAAGCAGCAAGACGAAGATGGGATTACATGTCAACTCTACTGTGATTTCAGTTCTGACATGGGTTATTGGTTTCCTCATCATGGCTATAAATATATACTATCTCGTCACCGGTTTCATCCACGTGCTCTTTCATAACCATCTCCCACTCGCAGCGGTCATCGTTATAGGGATACTTGGATTCTCCGCTTTGTCAGTGTATTTAGCTGGAATTGCTTATCTGGTTTTAAGAAAGAATAAGGAGGTTACTCCTCTCCTCGCAATAACATCAGAAGGTCGACGAAAGAGCAACGAGCCAAGTAATACGGTGGGGTATAGACTCCCAAGTGAAGATATAGTAAGCATGCAGTTGCCTCAAAGATTATCTACTACTGATGTTGACTGA | 1641 | 42.72 | MNNKMAAGTNSGQPQFIARAGDESYSHAPLIENSETDQIVVSDKKSWKNLFSYMGPGFLVCIAYIDPGNFETDLQAGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPRVQNFILWILAEIAIVACDIPEVIGTAFALNMLFKIPIWCGVLLTGLSTLFLLALQQYGIRKLEFLIALFVLTIAVCFFLELGYAKPDAGEVLYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSFQGIKEACRFYMIESGFALLVAFLINVSIISVSGAVCNAPDLNKEDQMNCTDLDLNKASFLLRNVLGRWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLKLRPWVRNFLTRSLAIVPSLIVAIIGGSSGAGQLIIIASMILSFELPFALVPLLKFTSSKTKMGLHVNSTVISVLTWVIGFLIMAINIYYLVTGFIHVLFHNHLPLAAVIVIGILGFSALSVYLAGIAYLVLRKNKEVTPLLAITSEGRRKSNEPSNTVGYRLPSEDIVSMQLPQRLSTTDVD | 546 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4090832 | 4095818 | - | evm.model.ptg000003l.1502 | HCH6g0290 | 545784 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0290 | 546 | NCBIfam | Nramp family divalent metal transporter | 55 | 423 | - | - | |
HCH6g0290 | 546 | NCBIfam | metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family | 49 | 426 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | Pfam | Natural resistance-associated macrophage protein-like | 70 | 432 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PANTHER | SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER | 34 | 502 | IPR001046 | GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | Hamap | Divalent metal cation transporter MntH [mntH]. | 37 | 458 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PRINTS | Natural resistance-associated macrophage protein signature | 370 | 387 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PRINTS | Natural resistance-associated macrophage protein signature | 129 | 155 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PRINTS | Natural resistance-associated macrophage protein signature | 232 | 255 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PRINTS | Natural resistance-associated macrophage protein signature | 402 | 421 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PRINTS | Natural resistance-associated macrophage protein signature | 157 | 176 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PRINTS | Natural resistance-associated macrophage protein signature | 182 | 203 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) | |
HCH6g0290 | 546 | PRINTS | Natural resistance-associated macrophage protein signature | 342 | 361 | IPR001046 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH13g0148 | HCH-Chr13:941611 | HCH6g0290 | HCH-Chr6:4090832 | 7.30E-168 | dispersed | |
HCH2g0004 | HCH-Chr2:279668 | HCH6g0290 | HCH-Chr6:4090832 | 6.40E-86 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0290 | K21398 | - | csv:101209649 | 900.197 |