Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0290 ATGAACAATAAGATGGCTGCTGGAACGAATTCTGGGCAGCCACAATTCATTGCGAGGGCCGGAGATGAAAGCTATTCGCATGCGCCGTTGATCGAGAATTCTGAAACTGATCAGATTGTTGTTTCTGATAAGAAAAGCTGGAAGAACTTATTTTCGTATATGGGACCGGGGTTTCTTGTTTGTATTGCCTATATTGATCCTGGAAATTTTGAAACTGATCTGCAGGCTGGAGCACAGTACAAGTATGGGTTACTTTGGATCATCTTAGTGGCTTCCTGTGCTGCCCTCATCATTCAATCCTTAGCAGCCAATCTAGGGGTTGTCACAGGAAAACATTTAGCAGAGCACTGTAAAGCGGAATACCCCAGGGTGCAAAATTTCATCCTATGGATCCTTGCTGAAATTGCAATTGTTGCATGTGATATTCCTGAAGTTATAGGAACAGCGTTTGCATTGAATATGCTCTTCAAAATTCCTATTTGGTGTGGGGTTCTTCTGACAGGGCTTAGTACTCTATTCCTTCTTGCACTGCAGCAATATGGGATTAGGAAGCTTGAATTCTTGATTGCATTGTTTGTATTGACAATTGCGGTTTGCTTCTTCCTGGAGCTAGGCTATGCAAAGCCTGATGCTGGAGAAGTTCTTTATGGGCTATTTGTCCCTCAACTAAAAGGAAGCGGCGCTACTGGTCTTGCAATTTCACTTCTTGGTGCTATGGTTATGCCGCACAATCTCTTTCTCCACTCTGCTTTGGTGCTCTCTAGGAAAATACCCCGATCTTTTCAGGGCATCAAGGAAGCTTGCAGATTTTATATGATAGAGAGTGGCTTTGCTCTTTTGGTGGCTTTCCTTATAAATGTTTCAATCATTTCTGTAAGTGGTGCTGTTTGCAATGCTCCAGATCTTAATAAAGAGGATCAAATGAACTGCACTGACTTGGACTTGAATAAAGCCTCATTTTTGCTGAGAAATGTTTTGGGTCGGTGGAGTTCAAAACTTTTCGCTGTTGCTTTGTTAGCTTCTGGTCAGAGTTCTACCATAACAGGAACCTATGCAGGACAGTATGTTATGCAGGGGTTTCTTGATTTGAAACTGAGGCCATGGGTCAGAAACTTTTTAACCCGAAGCCTAGCAATTGTTCCTAGTCTGATTGTTGCTATCATTGGCGGCTCCTCAGGGGCTGGGCAGTTGATCATTATTGCGTCGATGATTTTGTCATTTGAACTCCCTTTTGCTCTTGTTCCCCTTTTGAAGTTCACAAGCAGCAAGACGAAGATGGGATTACATGTCAACTCTACTGTGATTTCAGTTCTGACATGGGTTATTGGTTTCCTCATCATGGCTATAAATATATACTATCTCGTCACCGGTTTCATCCACGTGCTCTTTCATAACCATCTCCCACTCGCAGCGGTCATCGTTATAGGGATACTTGGATTCTCCGCTTTGTCAGTGTATTTAGCTGGAATTGCTTATCTGGTTTTAAGAAAGAATAAGGAGGTTACTCCTCTCCTCGCAATAACATCAGAAGGTCGACGAAAGAGCAACGAGCCAAGTAATACGGTGGGGTATAGACTCCCAAGTGAAGATATAGTAAGCATGCAGTTGCCTCAAAGATTATCTACTACTGATGTTGACTGA 1641 42.72 MNNKMAAGTNSGQPQFIARAGDESYSHAPLIENSETDQIVVSDKKSWKNLFSYMGPGFLVCIAYIDPGNFETDLQAGAQYKYGLLWIILVASCAALIIQSLAANLGVVTGKHLAEHCKAEYPRVQNFILWILAEIAIVACDIPEVIGTAFALNMLFKIPIWCGVLLTGLSTLFLLALQQYGIRKLEFLIALFVLTIAVCFFLELGYAKPDAGEVLYGLFVPQLKGSGATGLAISLLGAMVMPHNLFLHSALVLSRKIPRSFQGIKEACRFYMIESGFALLVAFLINVSIISVSGAVCNAPDLNKEDQMNCTDLDLNKASFLLRNVLGRWSSKLFAVALLASGQSSTITGTYAGQYVMQGFLDLKLRPWVRNFLTRSLAIVPSLIVAIIGGSSGAGQLIIIASMILSFELPFALVPLLKFTSSKTKMGLHVNSTVISVLTWVIGFLIMAINIYYLVTGFIHVLFHNHLPLAAVIVIGILGFSALSVYLAGIAYLVLRKNKEVTPLLAITSEGRRKSNEPSNTVGYRLPSEDIVSMQLPQRLSTTDVD 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4090832 4095818 - evm.model.ptg000003l.1502 HCH6g0290 545784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0290 546 NCBIfam Nramp family divalent metal transporter 55 423 - -
HCH6g0290 546 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 49 426 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 Pfam Natural resistance-associated macrophage protein-like 70 432 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 502 IPR001046 GO:0005384(PANTHER)|GO:0015086(PANTHER)|GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 Hamap Divalent metal cation transporter MntH [mntH]. 37 458 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PRINTS Natural resistance-associated macrophage protein signature 370 387 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PRINTS Natural resistance-associated macrophage protein signature 129 155 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PRINTS Natural resistance-associated macrophage protein signature 232 255 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PRINTS Natural resistance-associated macrophage protein signature 402 421 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PRINTS Natural resistance-associated macrophage protein signature 157 176 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PRINTS Natural resistance-associated macrophage protein signature 182 203 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
HCH6g0290 546 PRINTS Natural resistance-associated macrophage protein signature 342 361 IPR001046 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH13g0148 HCH-Chr13:941611 HCH6g0290 HCH-Chr6:4090832 7.30E-168 dispersed
HCH2g0004 HCH-Chr2:279668 HCH6g0290 HCH-Chr6:4090832 6.40E-86 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0290 K21398 - csv:101209649 900.197