Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0291 | ATGGCAAGTGAAGCAAATCTGAGAAATACTCTGTTTGGGAAATACGAAACAGGGAGGTTATTAGGAAAAGGAACTTTCGCCAAAGTCTATTATGGAAAAAACCTCATAACCAATGAAAGCGTTGCTATTAAAGTAATCCTCAAAGAAAAAGTGAAAAAAGAAGGATTATTAGAACAAATCCAAAGAGAAATCTCTGTCATGCGTTTAGTTCGTCATCCACACATCGTGGAATTGAAAGAAGTAATGGCAACAAAATCCAAGGTTTATTTTGTCATGGAATTTGTCAATGGCGGTGAATTATTTGCCAAAGTTTCACAAGGAAAACTTAACGAAGACAAGGCAAGACATTATTTCCGACAGCTTCTTAGTGCTGTTGATTTTTGTCATAGCCGTGGAGTTTCTCATCGTGATTTGAAACCGGAGAATCTTCTTCTTGATAAGAACGGGAACTTGAAAGTTTCTGATTTTGGGTTGTCTGCCTTGCCGGAGCAAGTACGGATTGATGGATTGCTTCATACGAGGTGTGGAACACCGACGTACGTGGCGCCGGAGGTTCTCCGGAAGAAGGGATATGATGGAGCTAAAGTTGATATTTGGTCATGTGGTGTAATTCTATTTGTTTTGCTTGCTGGTTTTTTGCCATTTCGTGCTGATAATGTTATGAAATTGTATAGGAAGATTTTCAATGCTGAGTATGAGTTCCCTCCTTGGTTTTCTTTAGAAGCTATGGATTTGATTTCCAAGCTTCTTGTTGTTGATCCGAAGAAGAGGATTTCGATTCCGGAGATTATGGAAAGCCCTTGGTTTCGGAATGGATTTAGTAAACCGATTGTGTTCAATGAGAAAGATGATCTCGATAATGAGATTTCAGAATTGGCAAATCCGAAATCGTCGCCTACTCCTTTTTACAATGCCTTTGAATTTATCTCCATGATGTCATCTGGTTTCGATTTGTCGAGTTTGTTTGAGAATAAGAAGAAATCTAGATCGGTTTTTACTTCGAAGTGCTCGGCGTCGACAATCGTCACAAAGCTCGTTTTGTTGGCAAAAAAGTTGAATTTCAAGGTAGTGAATTTGAGAGAGTATAAGGTGAAGATGCAGGCAAATGAAGAAGGGAGAAAGGGGAAGTTGATGGTGGCGGTGGAAGTGTTCGAGGCAGCACCGGAAGTGGCGGTTGTCGAGTTTTCTAAGACGGCAGGTGACACTCTTGAGTATGATAAGTTTTGTGACAAGGATGTGAGACCTGCAATTAAAGACATAGTTTGGAGTTGGCAAGGAGAGGATCATTGTCTCTAA | 1296 | 40.12 | MASEANLRNTLFGKYETGRLLGKGTFAKVYYGKNLITNESVAIKVILKEKVKKEGLLEQIQREISVMRLVRHPHIVELKEVMATKSKVYFVMEFVNGGELFAKVSQGKLNEDKARHYFRQLLSAVDFCHSRGVSHRDLKPENLLLDKNGNLKVSDFGLSALPEQVRIDGLLHTRCGTPTYVAPEVLRKKGYDGAKVDIWSCGVILFVLLAGFLPFRADNVMKLYRKIFNAEYEFPPWFSLEAMDLISKLLVVDPKKRISIPEIMESPWFRNGFSKPIVFNEKDDLDNEISELANPKSSPTPFYNAFEFISMMSSGFDLSSLFENKKKSRSVFTSKCSASTIVTKLVLLAKKLNFKVVNLREYKVKMQANEEGRKGKLMVAVEVFEAAPEVAVVEFSKTAGDTLEYDKFCDKDVRPAIKDIVWSWQGEDHCL | 431 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4133601 | 4134896 | + | evm.model.ptg000003l.1501 | HCH6g0291 | 545785 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0291 | 431 | Pfam | Protein kinase domain | 15 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0291 | 431 | Pfam | NAF domain | 302 | 356 | IPR004041 | GO:0007165(InterPro) | |
HCH6g0291 | 431 | CDD | CIPK_C | 304 | 418 | - | - | |
HCH6g0291 | 431 | ProSitePatterns | Protein kinases ATP-binding region signature. | 21 | 48 | IPR017441 | GO:0005524(InterPro) | |
HCH6g0291 | 431 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 94 | - | - | |
HCH6g0291 | 431 | Gene3D | Transferase(Phosphotransferase) domain 1 | 95 | 275 | - | - | |
HCH6g0291 | 431 | FunFam | Non-specific serine/threonine protein kinase | 6 | 94 | - | - | |
HCH6g0291 | 431 | FunFam | Non-specific serine/threonine protein kinase | 298 | 422 | - | - | |
HCH6g0291 | 431 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 133 | 145 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0291 | 431 | Gene3D | Kinase associated domain 1, KA1 | 298 | 423 | - | - | |
HCH6g0291 | 431 | FunFam | Non-specific serine/threonine protein kinase | 8 | 300 | - | - | |
HCH6g0291 | 431 | SMART | serkin_6 | 15 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0291 | 431 | ProSiteProfiles | NAF domain profile. | 298 | 323 | IPR018451 | GO:0007165(InterPro) | |
HCH6g0291 | 431 | SUPERFAMILY | Protein kinase-like (PK-like) | 12 | 270 | IPR011009 | - | |
HCH6g0291 | 431 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 6 | 414 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
HCH6g0291 | 431 | ProSiteProfiles | Protein kinase domain profile. | 15 | 269 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH6g0291 | HCH-Chr6:4133601 | HCH9g0825 | HCH-Chr9:5774557 | 3.40E-128 | dispersed | |
HCH12g0736 | HCH-Chr12:4687291 | HCH6g0291 | HCH-Chr6:4133601 | 3.90E-43 | transposed | |
HCH7g1559 | HCH-Chr7:48043213 | HCH6g0291 | HCH-Chr6:4133601 | 2.10E-49 | transposed | |
HCH9g1104 | HCH-Chr9:13210283 | HCH6g0291 | HCH-Chr6:4133601 | 1.30E-06 | transposed | |
HCH12g0412 | HCH-Chr12:2388446 | HCH6g0291 | HCH-Chr6:4133601 | 1.90E-166 | wgd | |
HCH14g0349 | HCH-Chr14:32381448 | HCH6g0291 | HCH-Chr6:4133601 | 2.20E-19 | wgd | |
HCH6g0291 | HCH-Chr6:4133601 | HCH8g0925 | HCH-Chr8:45556791 | 2.20E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81550 | PF00069 | Pkinase | 7.90E-77 | CL0016 | HCH | PK |
Pathway information
