Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0291 ATGGCAAGTGAAGCAAATCTGAGAAATACTCTGTTTGGGAAATACGAAACAGGGAGGTTATTAGGAAAAGGAACTTTCGCCAAAGTCTATTATGGAAAAAACCTCATAACCAATGAAAGCGTTGCTATTAAAGTAATCCTCAAAGAAAAAGTGAAAAAAGAAGGATTATTAGAACAAATCCAAAGAGAAATCTCTGTCATGCGTTTAGTTCGTCATCCACACATCGTGGAATTGAAAGAAGTAATGGCAACAAAATCCAAGGTTTATTTTGTCATGGAATTTGTCAATGGCGGTGAATTATTTGCCAAAGTTTCACAAGGAAAACTTAACGAAGACAAGGCAAGACATTATTTCCGACAGCTTCTTAGTGCTGTTGATTTTTGTCATAGCCGTGGAGTTTCTCATCGTGATTTGAAACCGGAGAATCTTCTTCTTGATAAGAACGGGAACTTGAAAGTTTCTGATTTTGGGTTGTCTGCCTTGCCGGAGCAAGTACGGATTGATGGATTGCTTCATACGAGGTGTGGAACACCGACGTACGTGGCGCCGGAGGTTCTCCGGAAGAAGGGATATGATGGAGCTAAAGTTGATATTTGGTCATGTGGTGTAATTCTATTTGTTTTGCTTGCTGGTTTTTTGCCATTTCGTGCTGATAATGTTATGAAATTGTATAGGAAGATTTTCAATGCTGAGTATGAGTTCCCTCCTTGGTTTTCTTTAGAAGCTATGGATTTGATTTCCAAGCTTCTTGTTGTTGATCCGAAGAAGAGGATTTCGATTCCGGAGATTATGGAAAGCCCTTGGTTTCGGAATGGATTTAGTAAACCGATTGTGTTCAATGAGAAAGATGATCTCGATAATGAGATTTCAGAATTGGCAAATCCGAAATCGTCGCCTACTCCTTTTTACAATGCCTTTGAATTTATCTCCATGATGTCATCTGGTTTCGATTTGTCGAGTTTGTTTGAGAATAAGAAGAAATCTAGATCGGTTTTTACTTCGAAGTGCTCGGCGTCGACAATCGTCACAAAGCTCGTTTTGTTGGCAAAAAAGTTGAATTTCAAGGTAGTGAATTTGAGAGAGTATAAGGTGAAGATGCAGGCAAATGAAGAAGGGAGAAAGGGGAAGTTGATGGTGGCGGTGGAAGTGTTCGAGGCAGCACCGGAAGTGGCGGTTGTCGAGTTTTCTAAGACGGCAGGTGACACTCTTGAGTATGATAAGTTTTGTGACAAGGATGTGAGACCTGCAATTAAAGACATAGTTTGGAGTTGGCAAGGAGAGGATCATTGTCTCTAA 1296 40.12 MASEANLRNTLFGKYETGRLLGKGTFAKVYYGKNLITNESVAIKVILKEKVKKEGLLEQIQREISVMRLVRHPHIVELKEVMATKSKVYFVMEFVNGGELFAKVSQGKLNEDKARHYFRQLLSAVDFCHSRGVSHRDLKPENLLLDKNGNLKVSDFGLSALPEQVRIDGLLHTRCGTPTYVAPEVLRKKGYDGAKVDIWSCGVILFVLLAGFLPFRADNVMKLYRKIFNAEYEFPPWFSLEAMDLISKLLVVDPKKRISIPEIMESPWFRNGFSKPIVFNEKDDLDNEISELANPKSSPTPFYNAFEFISMMSSGFDLSSLFENKKKSRSVFTSKCSASTIVTKLVLLAKKLNFKVVNLREYKVKMQANEEGRKGKLMVAVEVFEAAPEVAVVEFSKTAGDTLEYDKFCDKDVRPAIKDIVWSWQGEDHCL 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4133601 4134896 + evm.model.ptg000003l.1501 HCH6g0291 545785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0291 431 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0291 431 Pfam NAF domain 302 356 IPR004041 GO:0007165(InterPro)
HCH6g0291 431 CDD CIPK_C 304 418 - -
HCH6g0291 431 ProSitePatterns Protein kinases ATP-binding region signature. 21 48 IPR017441 GO:0005524(InterPro)
HCH6g0291 431 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
HCH6g0291 431 Gene3D Transferase(Phosphotransferase) domain 1 95 275 - -
HCH6g0291 431 FunFam Non-specific serine/threonine protein kinase 6 94 - -
HCH6g0291 431 FunFam Non-specific serine/threonine protein kinase 298 422 - -
HCH6g0291 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0291 431 Gene3D Kinase associated domain 1, KA1 298 423 - -
HCH6g0291 431 FunFam Non-specific serine/threonine protein kinase 8 300 - -
HCH6g0291 431 SMART serkin_6 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0291 431 ProSiteProfiles NAF domain profile. 298 323 IPR018451 GO:0007165(InterPro)
HCH6g0291 431 SUPERFAMILY Protein kinase-like (PK-like) 12 270 IPR011009 -
HCH6g0291 431 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 6 414 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH6g0291 431 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0291 HCH-Chr6:4133601 HCH9g0825 HCH-Chr9:5774557 3.40E-128 dispersed
HCH12g0736 HCH-Chr12:4687291 HCH6g0291 HCH-Chr6:4133601 3.90E-43 transposed
HCH7g1559 HCH-Chr7:48043213 HCH6g0291 HCH-Chr6:4133601 2.10E-49 transposed
HCH9g1104 HCH-Chr9:13210283 HCH6g0291 HCH-Chr6:4133601 1.30E-06 transposed
HCH12g0412 HCH-Chr12:2388446 HCH6g0291 HCH-Chr6:4133601 1.90E-166 wgd
HCH14g0349 HCH-Chr14:32381448 HCH6g0291 HCH-Chr6:4133601 2.20E-19 wgd
HCH6g0291 HCH-Chr6:4133601 HCH8g0925 HCH-Chr8:45556791 2.20E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81550 PF00069 Pkinase 7.90E-77 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0291 - - - 0.0