Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0293 ATGGCTTATCCTTCTTGGTTAGATGCTGTAAACACTTCTTTGGATCTCAATATCAATCCTCACAGATTTTCCAGTGACAATCAGAAGGAGGTTCAAAACAATTATTTGGATTTTGAGAAGAAGCTTTCTGTGAAAGAAGAGACTGGTGCTTTGGTGGACGAATTGAAAAGGGTGAGTGCAGAAAACAAGAAACTAACTGAAATGCTAACTGTGGTGTGTGAAAATTACAACACTTTGAGGAATCATTTAATGGAGGAAATGAACAAAAACTCTGCTGAAAAAGAATTGAGTTCTTCCAAGAAAAGAAAATCAGAAAGCAGCAACAACAACAATATGACAGGAATCAATGGAATCAATGGAAATTCAGAGAGTAGTTCAACAGATGAAGAATCCTACAAGAGGCCCAAGGAAGAAACTATCAAAGCCAAAATCACTAAAACCAGTGTTAGAATTGGAGCTTCTGATACAAATCTTGTTGTAAAAGATGGATATCAATGGAGGAAATATGGCCAAAAAGTCACAAGAGATAACCCATGTCCTAGAGCTTACTTCAAATGCTCTTTTGCCCCTAGTTGCCCTGTTAAAAAGAAGGTTCAAAGAAGCGTAGAAGATCAATCAATTCTAGTGGCTACCTACGAAGGCGAGCATAACCATCCACTCCCATCTCAAATGGAGGCAACATCCGGCTCCGCCGCCCGGAGCATAAACATTACTCCGGCGCCGTTCACGGCAGCGACGACGGTGGCCGGATCCTTCGCATCTTCGATTACTCTGGATTTGGCGAAGTCAAAGCCGAGCAATGAAGCTAAAATTTCAAACCCTAAATTTGACACGCCGGAAATGCAAAAAATTTTGGTCGAACAAATGGCGTCTTCTTTGACGAAAGATCCTAATTTCACGGCGGCGCTCGCGGCGGCTATTTCTGGGAAAATTTTCCAACAATGA 945 41.48 MAYPSWLDAVNTSLDLNINPHRFSSDNQKEVQNNYLDFEKKLSVKEETGALVDELKRVSAENKKLTEMLTVVCENYNTLRNHLMEEMNKNSAEKELSSSKKRKSESSNNNNMTGINGINGNSESSSTDEESYKRPKEETIKAKITKTSVRIGASDTNLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPLPSQMEATSGSAARSINITPAPFTAATTVAGSFASSITLDLAKSKPSNEAKISNPKFDTPEMQKILVEQMASSLTKDPNFTAALAAAISGKIFQQ 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4173823 4175265 - evm.model.ptg000003l.1499 HCH6g0293 545787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0293 314 SUPERFAMILY WRKY DNA-binding domain 157 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0293 314 Coils Coil 89 109 - -
HCH6g0293 314 Gene3D WRKY domain 145 222 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0293 314 ProSiteProfiles WRKY domain profile. 155 221 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0293 314 SMART WRKY_cls 160 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0293 314 Pfam WRKY DNA -binding domain 161 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0293 314 MobiDBLite consensus disorder prediction 103 126 - -
HCH6g0293 314 MobiDBLite consensus disorder prediction 89 139 - -
HCH6g0293 314 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 32 309 IPR044810 GO:0003700(InterPro)
HCH6g0293 314 FunFam WRKY transcription factor 40 145 222 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0470 HCH-Chr4:3069797 HCH6g0293 HCH-Chr6:4173823 1.50E-61 dispersed
HCH4g0471 HCH-Chr4:3078766 HCH6g0293 HCH-Chr6:4173823 1.00E-32 dispersed
HCH6g0293 HCH-Chr6:4173823 HCH7g0245 HCH-Chr7:1692539 1.20E-26 dispersed
HCH12g0413 HCH-Chr12:2396331 HCH6g0293 HCH-Chr6:4173823 8.50E-39 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33687 PF03106 WRKY 3.40E-23 CL0274 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0293 - - - 0.0