Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0297 ATGGCGGACCTCAAAGAGCGCTTGCTTCCTCCGAAACCTGCGTCTGCTATAAATCTTAGGGAAGCAGTTAGTAGGCCATCAGCCTCTGGGAGGGTTCCTTTTCAAGGTGTGGATGTTCTAGGTTTAAAGAAGCGTGGCCAAGGACTTAGATCTTGGATTCGGGTAGATTCTTCTGGAAATTCCCAAATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCCCGTGATTTGCGCTTGCTTGATCCCCTGTTTGTTTACCCCTCAACAATACTTGGTAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGACGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTGTTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGACGGAAATCACGGGAATCATGGAACTGACTTGCTCCGAAGAAGGGGAAGTAGGAATTTCGATAATATATTTGGAAGCACCTCTCCTGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTTTAGAGGCAGCTTGTACCTTTCTTGATTCTCAGGCTGCAGAATTAGAAATTGAAGCATATCCACTACTTGATGAACTTACATCAAAGATCAGCACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCTTGACTCGTAGGGTTCAGAAGGTCAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGATTCCTTTATTTATGGTGATCAGTCTGTGACGGGATACAGATCAATTGATGGAGCATCCATTTCTGCCCCGGTTTCTCCTGTATCTTCACCACCCGAAACTCGCAAGCTTGAGAAGACTTTGAGCATTGCAAGGAGCAGACATGAGAGCATGAGAAGTTCAGAAAGTGCCACCGAAAGTATTGAAGAGCTTGAGATGCTGCTGGAAGCATATTTTGTTGTCATTGACAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACCGAAGATTTCATCAACATCCAGCTGGATAATGTACGAAATCAGTTGATTCAATTCGAGCTACTACTCACTACAGCAACATTTGTGGTCGCCATTTTCGGAGTGGTAGCGGGAATCTTTGGGATGAATTTTGAAGTACCATTGTTTCAAGATCCTAATGCATTCAAGTGGGTGCTTTTAATTACAGGGGTATGTGGAGTTATCATATTTTTGGCATTTGTTTGGTTTTTCAGATACAAAAGATTGATGTCACTTTAG 1350 42.96 MADLKERLLPPKPASAINLREAVSRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGNHGTDLLRRRGSRNFDNIFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMDSFIYGDQSVTGYRSIDGASISAPVSPVSSPPETRKLEKTLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEVPLFQDPNAFKWVLLITGVCGVIIFLAFVWFFRYKRLMSL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4354754 4358253 - evm.model.ptg000003l.1495 HCH6g0297 545791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0297 449 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 35 446 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH6g0297 449 FunFam Magnesium transporter MRS2-1 387 447 - -
HCH6g0297 449 Pfam Magnesium transporter MRS2-like 56 272 - -
HCH6g0297 449 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 386 439 IPR045863 -
HCH6g0297 449 Gene3D Magnesium transport protein CorA, transmembrane region 387 447 - -
HCH6g0297 449 Pfam CorA-like Mg2+ transporter protein 343 437 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH6g0297 449 CDD Mrs2_Mfm1p-like 52 446 IPR039204 -
HCH6g0297 449 Gene3D Magnesium transport protein CorA, transmembrane region 124 380 - -
HCH6g0297 449 Gene3D - 40 123 - -
HCH6g0297 449 Coils Coil 230 257 - -
HCH6g0297 449 FunFam Magnesium transporter MRS2-1 40 123 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0153 HCH-Chr4:850633 HCH6g0297 HCH-Chr6:4354754 1.10E-111 dispersed
HCH6g0297 HCH-Chr6:4354754 HCH6g1542 HCH-Chr6:48822187 3.50E-88 dispersed
HCH6g0297 HCH-Chr6:4354754 HCH5g0064 HCH-Chr5:389426 9.30E-89 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0297 K16075 - csv:101217419 782.711