Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0297 ATGGCGGACCTCAAAGAGCGCTTGCTTCCTCCGAAACCTGCGTCTGCTATAAATCTTAGGGAAGCAGTTAGTAGGCCATCAGCCTCTGGGAGGGTTCCTTTTCAAGGTGTGGATGTTCTAGGTTTAAAGAAGCGTGGCCAAGGACTTAGATCTTGGATTCGGGTAGATTCTTCTGGAAATTCCCAAATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCCCGTGATTTGCGCTTGCTTGATCCCCTGTTTGTTTACCCCTCAACAATACTTGGTAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGACGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTGTTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGACGGAAATCACGGGAATCATGGAACTGACTTGCTCCGAAGAAGGGGAAGTAGGAATTTCGATAATATATTTGGAAGCACCTCTCCTGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTTTAGAGGCAGCTTGTACCTTTCTTGATTCTCAGGCTGCAGAATTAGAAATTGAAGCATATCCACTACTTGATGAACTTACATCAAAGATCAGCACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCTTGACTCGTAGGGTTCAGAAGGTCAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGATTCCTTTATTTATGGTGATCAGTCTGTGACGGGATACAGATCAATTGATGGAGCATCCATTTCTGCCCCGGTTTCTCCTGTATCTTCACCACCCGAAACTCGCAAGCTTGAGAAGACTTTGAGCATTGCAAGGAGCAGACATGAGAGCATGAGAAGTTCAGAAAGTGCCACCGAAAGTATTGAAGAGCTTGAGATGCTGCTGGAAGCATATTTTGTTGTCATTGACAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACCGAAGATTTCATCAACATCCAGCTGGATAATGTACGAAATCAGTTGATTCAATTCGAGCTACTACTCACTACAGCAACATTTGTGGTCGCCATTTTCGGAGTGGTAGCGGGAATCTTTGGGATGAATTTTGAAGTACCATTGTTTCAAGATCCTAATGCATTCAAGTGGGTGCTTTTAATTACAGGGGTATGTGGAGTTATCATATTTTTGGCATTTGTTTGGTTTTTCAGATACAAAAGATTGATGTCACTTTAG 1350 42.96 MADLKERLLPPKPASAINLREAVSRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGNHGTDLLRRRGSRNFDNIFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMDSFIYGDQSVTGYRSIDGASISAPVSPVSSPPETRKLEKTLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEVPLFQDPNAFKWVLLITGVCGVIIFLAFVWFFRYKRLMSL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4354754 4358253 - evm.model.ptg000003l.1495 HCH6g0297 545791

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0297 449 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 35 446 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
HCH6g0297 449 FunFam Magnesium transporter MRS2-1 387 447 - -
HCH6g0297 449 Pfam Magnesium transporter MRS2-like 56 272 - -
HCH6g0297 449 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 386 439 IPR045863 -
HCH6g0297 449 Gene3D Magnesium transport protein CorA, transmembrane region 387 447 - -
HCH6g0297 449 Pfam CorA-like Mg2+ transporter protein 343 437 IPR002523 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
HCH6g0297 449 CDD Mrs2_Mfm1p-like 52 446 IPR039204 -
HCH6g0297 449 Gene3D Magnesium transport protein CorA, transmembrane region 124 380 - -
HCH6g0297 449 Gene3D - 40 123 - -
HCH6g0297 449 Coils Coil 230 257 - -
HCH6g0297 449 FunFam Magnesium transporter MRS2-1 40 123 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0297 K16075 - - csv:101217419 782.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g0153 HCH-Chr4:850633 HCH6g0297 HCH-Chr6:4354754 1.10E-111 dispersed
HCH6g0297 HCH-Chr6:4354754 HCH6g1542 HCH-Chr6:48822187 3.50E-88 dispersed
HCH6g0297 HCH-Chr6:4354754 HCH5g0064 HCH-Chr5:389426 9.30E-89 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0297 . 1 449 MRS2 Gene Family AT1G16010 83.1 2.3e-204 708.4
HCH4g0153 . 6 383 MRS2 Gene Family AT1G16010 55.8 1.6e-112 403.3
HCH5g0064 . 27 386 MRS2 Gene Family AT1G16010 50.3 4.6e-88 322.0
HCH6g1542 . 1 366 MRS2 Gene Family AT5G64560 81.9 1.6e-161 565.8
HCH5g0064 . 1 372 MRS2 Gene Family AT5G64560 70.7 8.6e-136 480.3
HCH7g0748 . 36 497 MRS2 Gene Family AT3G19640 67.9 4.1e-159 558.1
HCH11g0836 . 1 449 MRS2 Gene Family AT3G58970 64.6 1.6e-146 516.2
HCH4g0153 . 6 383 MRS2 Gene Family AT2G03620 71.4 1.1e-142 503.4
HCH6g0297 . 13 449 MRS2 Gene Family AT2G03620 52.5 2.5e-112 402.5
HCH6g1542 . 1 328 MRS2 Gene Family AT5G09690 76.2 6.2e-127 450.7
HCH5g0064 . 1 334 MRS2 Gene Family AT5G09690 66.7 4.6e-114 407.9
HCH6g0297 . 39 385 MRS2 Gene Family AT5G09690 50.4 4.1e-78 288.5
HCH6g1542 . 12 288 MRS2 Gene Family AT5G09720 67.0 8.5e-91 330.5
HCH5g0064 . 33 294 MRS2 Gene Family AT5G09720 62.2 4.9e-78 288.1
HCH6g0297 . 1 449 MRS2 Gene Family AT1G80900 81.8 1.3e-199 692.6
HCH4g0153 . 6 383 MRS2 Gene Family AT1G80900 54.8 5.0e-111 398.3
HCH3g1132 . 117 456 MRS2 Gene Family AT5G22830 82.6 1.3e-157 553.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42