Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0297 | ATGGCGGACCTCAAAGAGCGCTTGCTTCCTCCGAAACCTGCGTCTGCTATAAATCTTAGGGAAGCAGTTAGTAGGCCATCAGCCTCTGGGAGGGTTCCTTTTCAAGGTGTGGATGTTCTAGGTTTAAAGAAGCGTGGCCAAGGACTTAGATCTTGGATTCGGGTAGATTCTTCTGGAAATTCCCAAATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCCCGTGATTTGCGCTTGCTTGATCCCCTGTTTGTTTACCCCTCAACAATACTTGGTAGAGAGAAGGCTATTGTGGTCAATCTAGAGCAGATTCGATGTATTATAACAGCTGACGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTGTTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGACGGAAATCACGGGAATCATGGAACTGACTTGCTCCGAAGAAGGGGAAGTAGGAATTTCGATAATATATTTGGAAGCACCTCTCCTGATTATTTGCCCTTTGAGTTTAGGGCTTTAGAAGTTGCTTTAGAGGCAGCTTGTACCTTTCTTGATTCTCAGGCTGCAGAATTAGAAATTGAAGCATATCCACTACTTGATGAACTTACATCAAAGATCAGCACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCTTGACTCGTAGGGTTCAGAAGGTCAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTCACCGAGAAGAAAATGAGAATGGATTCCTTTATTTATGGTGATCAGTCTGTGACGGGATACAGATCAATTGATGGAGCATCCATTTCTGCCCCGGTTTCTCCTGTATCTTCACCACCCGAAACTCGCAAGCTTGAGAAGACTTTGAGCATTGCAAGGAGCAGACATGAGAGCATGAGAAGTTCAGAAAGTGCCACCGAAAGTATTGAAGAGCTTGAGATGCTGCTGGAAGCATATTTTGTTGTCATTGACAGCACCCTGAACAAGTTGACATCGTTGAAGGAGTACATCGATGACACCGAAGATTTCATCAACATCCAGCTGGATAATGTACGAAATCAGTTGATTCAATTCGAGCTACTACTCACTACAGCAACATTTGTGGTCGCCATTTTCGGAGTGGTAGCGGGAATCTTTGGGATGAATTTTGAAGTACCATTGTTTCAAGATCCTAATGCATTCAAGTGGGTGCTTTTAATTACAGGGGTATGTGGAGTTATCATATTTTTGGCATTTGTTTGGTTTTTCAGATACAAAAGATTGATGTCACTTTAG | 1350 | 42.96 | MADLKERLLPPKPASAINLREAVSRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGNHGTDLLRRRGSRNFDNIFGSTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMDSFIYGDQSVTGYRSIDGASISAPVSPVSSPPETRKLEKTLSIARSRHESMRSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEVPLFQDPNAFKWVLLITGVCGVIIFLAFVWFFRYKRLMSL | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4354754 | 4358253 | - | evm.model.ptg000003l.1495 | HCH6g0297 | 545791 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0297 | 449 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 35 | 446 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
HCH6g0297 | 449 | FunFam | Magnesium transporter MRS2-1 | 387 | 447 | - | - | |
HCH6g0297 | 449 | Pfam | Magnesium transporter MRS2-like | 56 | 272 | - | - | |
HCH6g0297 | 449 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 386 | 439 | IPR045863 | - | |
HCH6g0297 | 449 | Gene3D | Magnesium transport protein CorA, transmembrane region | 387 | 447 | - | - | |
HCH6g0297 | 449 | Pfam | CorA-like Mg2+ transporter protein | 343 | 437 | IPR002523 | GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro) | |
HCH6g0297 | 449 | CDD | Mrs2_Mfm1p-like | 52 | 446 | IPR039204 | - | |
HCH6g0297 | 449 | Gene3D | Magnesium transport protein CorA, transmembrane region | 124 | 380 | - | - | |
HCH6g0297 | 449 | Gene3D | - | 40 | 123 | - | - | |
HCH6g0297 | 449 | Coils | Coil | 230 | 257 | - | - | |
HCH6g0297 | 449 | FunFam | Magnesium transporter MRS2-1 | 40 | 123 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g0153 | HCH-Chr4:850633 | HCH6g0297 | HCH-Chr6:4354754 | 1.10E-111 | dispersed | |
HCH6g0297 | HCH-Chr6:4354754 | HCH6g1542 | HCH-Chr6:48822187 | 3.50E-88 | dispersed | |
HCH6g0297 | HCH-Chr6:4354754 | HCH5g0064 | HCH-Chr5:389426 | 9.30E-89 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0297 | K16075 | - | csv:101217419 | 782.711 |