Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0302 ATGAAGAAGGATACGAAGATAGATCAGAATCAGAAGAAGGTTTATCCCACCGGAGAAGAGTTCTACACTGTGTATGAGGAGATTGGGCAGGGGGTGAGTGCCTCCGTCCATCGTGCTCTTTGTAAACCTTTAAACGAGATCGTCGCCATCAAGATCCTCGATTTTGAGCGAGAAAATGCCGATCTGACTAGCATTTATCATGAGGTGCAAACAATGGTGTTGGCTGATCACCCCAATGTCCTTAAATCACATTGCTCCTTTGTCAAAGACCAAACTTTGTGGATTATTATGCCATTTATGGCAGGGGGGTCATGCCTCCACATAATGAAGGCGGCATATCCTGATGGTTTTGAGGAAGTAGTTATAGCAACAATATTACGGGAAGTATTGAAGGGCATCGAATATCTTCATCATTATGGACACATACATCGGGATGTAAAAGCAGGAAATATTCTTATTGACTCACGTGGTGCAATAAAGTTGGGGGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGACAGGCAACGCATGAGGAATACATTCGTTGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGATTTCAAGGCCGACATTTGGTCTTTTGCCATAACTGCATTAGAGCTTGCCCATGGTCATGCCCCTTTTTCGAAGTATCCTCCGATGAAGGTGCTGATGATGACCTTGCAAAATGCACCTCCAGGCCTTGATTATGAGAGGGACAAGAAATTTTCAAGATCTTTTAGGCACATGCTTGCTAATTGTTTGGTAAAAGACCCTTCAAAACGGCCTTCTGCATTTAAGCTACTGGAGCATTCCTTTTTTAAACAAGCCCGATCAAATGATTATATTTCACGCACTCTTTTAGATGGGCTGCCTGTTCTTGGTGATCGTGTTAAGGCACTTAAGAGAAAGGAAGAAGATATGCTTGCACAAAAGAAAATGCCAGATGGGAAGATGGAAGAATTATCACAGAATGAATATAAACGTGGAATAAGTGGGTGGAACTTCAATCTTGATGATTTAAAGAATCAAGCATCTTCGATTCAGGGTTTTGATGAGTCCATATGTGAAATCAACGAAACTGGAGGAAGCTCGAATTCCTTGTCTGCACTTGATGCGCAGGAAAAAAAATTGCAATGTCAAAGTTATTCAGAAGTTCCAAATACCGAAGAGAATGGCGTGATGCTGAGTCAACCACTTCCTTCACCACCCATTGACTTCAAATTTAATGACACAATAGATGGTGGTCAAAAAACTTATAATGACTCAAAAGTTCCTTGTTCATGCTATCAAAGTCATTCTTTGCAAAATTCTTCACCCCACCATGATGATCAACTTACTGATGGTTCCGGTGAAGAGCTTCATTTGGAGAACAACAAAAGAATTTTTAGGAGTGCTTCTAATCCTTGTCAACATAGAAGAAGTGTTTCATCTAACAATGTTATTTTACAAGAAGTTAGTTTGCCTCTGACCAAACGAGAAAGTTACGAGACAGAAAAGACTGAATCTCATTCTAAAGATTCCAAATCATCAGGGAACGATGAAGAACAAGATGAGAAAGCTAAGGCATTAGTTGTTCAACAGAAAGGGCGTTTCAAAGTTACTTCGGAGAATTCTGATGCGGAGAAGGCAATTCCATCTCCTATTTTGCAAAAAAGTCGCAGCATGCAGGTGATCACCTCAAATTTTGCTACGGCATCGACTCCACCTTCTAATCTACCGACTCCTCTGCTTTCATCTATACCTTCATCATCTCTTGCTTTACCATCAACATATTGTAGCTATTCTATTTATCCAGTGTTGCAGTCTATTTTGCAGACAAATATAGTTCAAAGGGAAGATATTTTGAATCTAATGAAGCAAGAAGTTATTAGAAATTCTGCAGCCAACGATGTGGCTGATGGAGGAGGTATGGCAGCGACAAACATAACAACAATGGAGAAATCTTTGCTTGAAGCGGCTCACGATAGGGAAAAAAGTTTACTTTACGAAATAACCGAGTTACAATGGAGGATAATATGTGCCCAAGATGAACTCCAAAAATTAAAATCAAAAAACACAAGTTAA 2094 40.16 MKKDTKIDQNQKKVYPTGEEFYTVYEEIGQGVSASVHRALCKPLNEIVAIKILDFERENADLTSIYHEVQTMVLADHPNVLKSHCSFVKDQTLWIIMPFMAGGSCLHIMKAAYPDGFEEVVIATILREVLKGIEYLHHYGHIHRDVKAGNILIDSRGAIKLGDFGVSACLFDSGDRQRMRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITALELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSRSFRHMLANCLVKDPSKRPSAFKLLEHSFFKQARSNDYISRTLLDGLPVLGDRVKALKRKEEDMLAQKKMPDGKMEELSQNEYKRGISGWNFNLDDLKNQASSIQGFDESICEINETGGSSNSLSALDAQEKKLQCQSYSEVPNTEENGVMLSQPLPSPPIDFKFNDTIDGGQKTYNDSKVPCSCYQSHSLQNSSPHHDDQLTDGSGEELHLENNKRIFRSASNPCQHRRSVSSNNVILQEVSLPLTKRESYETEKTESHSKDSKSSGNDEEQDEKAKALVVQQKGRFKVTSENSDAEKAIPSPILQKSRSMQVITSNFATASTPPSNLPTPLLSSIPSSSLALPSTYCSYSIYPVLQSILQTNIVQREDILNLMKQEVIRNSAANDVADGGGMAATNITTMEKSLLEAAHDREKSLLYEITELQWRIICAQDELQKLKSKNTS 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4435157 4442552 - evm.model.ptg000003l.1490 HCH6g0302 545796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0302 697 Coils Coil 674 694 - -
HCH6g0302 697 ProSiteProfiles Protein kinase domain profile. 22 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0302 697 FunFam Serine/threonine-protein kinase BLUS1 11 99 - -
HCH6g0302 697 Gene3D Transferase(Phosphotransferase) domain 1 103 334 - -
HCH6g0302 697 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 12 696 IPR047173 GO:0043539(InterPro)
HCH6g0302 697 MobiDBLite consensus disorder prediction 440 460 - -
HCH6g0302 697 MobiDBLite consensus disorder prediction 502 531 - -
HCH6g0302 697 CDD STKc_OSR1_SPAK 22 283 - -
HCH6g0302 697 SUPERFAMILY Protein kinase-like (PK-like) 22 592 IPR011009 -
HCH6g0302 697 FunFam serine/threonine-protein kinase BLUS1 isoform X1 103 336 - -
HCH6g0302 697 MobiDBLite consensus disorder prediction 401 423 - -
HCH6g0302 697 Gene3D Phosphorylase Kinase; domain 1 10 99 - -
HCH6g0302 697 SMART serkin_6 22 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0302 697 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524(InterPro)
HCH6g0302 697 Pfam Protein kinase domain 22 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0302 HCH-Chr6:4435157 HCH9g0143 HCH-Chr9:820812 3.80E-137 dispersed
HCH6g0302 HCH-Chr6:4435157 HCH13g0822 HCH-Chr13:8095930 2.20E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81552 PF00069 Pkinase 1.80E-57 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0302 K08835 - csv:101211076 912.138