Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0312 ATGGCCATTGAAACCGATCAAAACGACTTCATTTTCAGATCAAAACTCCCCGACATCTACATCCCTAAACACCTCCCTCTCCACTCCTATTGCTTTGAAAACATCTCAAAGAACGGGCAACGTACGTGCCTCATCAACGGCGTCACCGGCGACGTTTACACCTACGACGACGTCGTTCTAACGGCTCGCCGTGTAGCTTCCGGTCTTAACAAACTCGGCATTCAACAAGGAGAAACCATCATGCTCTTACTTCCCAATTCCCCGGAATTCGTTTTCGCTTTCCTCGGCGCCTCGTATCGCGGCGCTGTCATGACGGCGGCGAATCCGTTTTTCACGGCGGCTGAAATCGAGAAACAAGCGAAAGGATCGAAAGCCAAGATGATTATAACTCAATCATCGTACTACGATAAAGTAAAAGATTTTATTAAGAATTCCGATTCCAATTCTGATTCTGATGTAATAATCGTGACCGTTGATTCTCCACCACACGGTTGTTTATCTTTTTCCGTACTAACGGAAGCAAACGAGAGTGAAATTCCGAAAGTAGACATCGACCCGAACGATGTCGTGGCGCTTCCATATTCGTCGGGAACCACAGGATTACCAAAAGGCGTTATGCTAACGCACAAGGGATTAGTGACAAGTGTCGCGCAACAAGTGGATGGAGAGAATCCGAATTTGTATTATCGAAACGACGACGTAATATTATGCGTTTTGCCGCTGTTTCATATCTATTCTTTGAATTCGGTTTTGTTGTGTGGGTTAAGGGCGGGAGCTACCATTGTTGTCATGCCAAAGTTTGAGATTGGGTTATTGTTGAAGTTGGTTGAGAAATATAGAGTTTCGATTGCCCCGATCGTGCCGCCGATTGTTTTAGCGATCGCAAAGTCATCCGAACTTGATAAATATGACCTTTCTTCTATTAGGGTGTTGAAATCTGGAGGAGCTCCGTTGGGAAAGGAGTTGGAAGATACGGTTAGAGCTAAGTTTCCTAAGGTCATTCTTAGTCAGGGATATGGAATGACAGAAGCAGGTCCAGTTCTAACCATGTCTTTAGCATTTGCAAAAGATCCCTTCCCGGTAAAACCAGGCGCTTGTGGAACAGTCATAAGGAATGCCGAGATAAAGATCGTAGACACCGAAACCGGTGGCTCTTTACCTCGTAACACGCCGGGAGAAATCTGCATTAGAGGTGATCAAATCATGAAAGGATATCTCAACAACCCGGAGGCGACGGCGGCAACCATTGATAAAGACGGGTGGCTCCACACCGGAGATATCGGAATTATCGACGACGATGACGAGCTTTTCATCGTCGATCGATTGAAGGAATTGATCAAATATAAAGGATTTCAGGTTGCACCGGCGGAAATTGAAGCCTTGTTACTTACTCATCCTATGATTTCTGATGCAGCGGTTGTTCCAATGAAAGATGAACAAGCTGGAGAAGTTCCGGTTGCTTTTGTTGTGAAATTGAAGAATTCTGAGGTTACTGAGGATGAAATTAAGCAATTTATTTCTAAACAGGTGGTTTTCTACAAGAGAATAAACCGAGTGTTTTTCATTGATGCAATTCCGAAATCACCCTCGGGGAAGATCTTGAGGAAGGAATTGAGGGCAAAACTGGCCGCTGATTTTCCTGATCAGAAATAA 1653 44.65 MAIETDQNDFIFRSKLPDIYIPKHLPLHSYCFENISKNGQRTCLINGVTGDVYTYDDVVLTARRVASGLNKLGIQQGETIMLLLPNSPEFVFAFLGASYRGAVMTAANPFFTAAEIEKQAKGSKAKMIITQSSYYDKVKDFIKNSDSNSDSDVIIVTVDSPPHGCLSFSVLTEANESEIPKVDIDPNDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYYRNDDVILCVLPLFHIYSLNSVLLCGLRAGATIVVMPKFEIGLLLKLVEKYRVSIAPIVPPIVLAIAKSSELDKYDLSSIRVLKSGGAPLGKELEDTVRAKFPKVILSQGYGMTEAGPVLTMSLAFAKDPFPVKPGACGTVIRNAEIKIVDTETGGSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGIIDDDDELFIVDRLKELIKYKGFQVAPAEIEALLLTHPMISDAAVVPMKDEQAGEVPVAFVVKLKNSEVTEDEIKQFISKQVVFYKRINRVFFIDAIPKSPSGKILRKELRAKLAADFPDQK 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4851461 4855253 + evm.model.ptg000003l.1480 HCH6g0312 545806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0312 550 Gene3D - 443 545 IPR045851 -
HCH6g0312 550 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 6 539 - GO:0016405(PANTHER)
HCH6g0312 550 Gene3D - 5 442 IPR042099 -
HCH6g0312 550 SUPERFAMILY Acetyl-CoA synthetase-like 9 544 - -
HCH6g0312 550 Pfam AMP-binding enzyme 33 406 IPR000873 -
HCH6g0312 550 FunFam 4-coumarate--CoA ligase 2 444 545 - -
HCH6g0312 550 CDD 4CL 21 538 - -
HCH6g0312 550 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
HCH6g0312 550 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 443 - -
HCH6g0312 550 Pfam AMP-binding enzyme C-terminal domain 457 532 IPR025110 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0258 HCH-Chr10:2150478 HCH6g0312 HCH-Chr6:4851461 3.70E-225 dispersed
HCH12g0078 HCH-Chr12:402955 HCH6g0312 HCH-Chr6:4851461 7.60E-101 dispersed
HCH14g1128 HCH-Chr14:38177026 HCH6g0312 HCH-Chr6:4851461 1.40E-27 dispersed
HCH4g1242 HCH-Chr4:8480249 HCH6g0312 HCH-Chr6:4851461 2.00E-234 dispersed
HCH6g0312 HCH-Chr6:4851461 HCH8g1024 HCH-Chr8:46243694 6.70E-214 dispersed
HCH1g1156 HCH-Chr1:58955150 HCH6g0312 HCH-Chr6:4851461 2.20E-116 transposed
HCH2g0350 HCH-Chr2:45029420 HCH6g0312 HCH-Chr6:4851461 2.70E-197 transposed
HCH4g1241 HCH-Chr4:8472513 HCH6g0312 HCH-Chr6:4851461 7.70E-231 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0312 K01904 - csv:101215427 887.1