Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0326 ATGGAGCTGGGTTTGCGACTCGGAGATTCCTCTCCTCCATTTAAATACTCAGAGAAACCTCAACAGCCATCCCTTTCACACAAAGGCTTGGATTTTTCCCTTGGCTTCTCTTCTTATATTCCTCATGTTGAAGAAGAAGAAGATGAAGAAAATCAAAACATCAACGATGACGAGGATGATGATGATGATGATGATTCTCCGTTCCAGCTGGATCTTCTTCCTCGTACTCCTGTCGCACGCTCCCATAATTTCTCTCTCCCATCTTCTGAAACTGCGATGGCGGCAACGGACGGCGGAGGAGAGTCGCCGGGAAATGCAGTAGTAAGTTCAGGATTTGAGGTGGAGTATTGCAAGTACGGAGGCGGAGGATCAAAGGGAAGGTTGTTTCAGTCATGGGAGGAAGGAGGAGAGAGAGATTGTTGTAGAGGAAGTGATGAAGATGATCAAAATATGATTGGTTCTTCTGCTAATTCAAGGAAGAAACTCAGGCTTTCAAGAGAACAATCTGCTTTTCTTGAAGAAAGTTTTAAAGAACATCATACTCTTTACCCAAAGCAAAAACTTGAACTTGCAAGGAGACTTAATCTTCGGCCTCGTCAAGTTGAAGTCTGGTTTCAAAACCGAAGAGCAAGAACAAAGTTGAAGCAGACAGAAGTGGATTGTGAATACTTAAAGAAGTGTTGTGAGACATTGACTCAAGAAAACAGAAAGCTTCAAAAGGAATTGAAAGATTTAAGAGCTTTGAAAACAACCGATTCTCTCTACATGCATTTGCCAGCCACCACCCTCACTATGTGCCCTTCTTGTGAACGTGTCGCCACCGCCACCGTGGCAGCCACCGCTACCGCTGCCATGGTGCAATCTAGGAAAGAACCGATGTCGAAAGCTTCTGGATTTTCTTTTACTAGAACAAGCAGTAATTCCTAG 927 44.01 MELGLRLGDSSPPFKYSEKPQQPSLSHKGLDFSLGFSSYIPHVEEEEDEENQNINDDEDDDDDDDSPFQLDLLPRTPVARSHNFSLPSSETAMAATDGGGESPGNAVVSSGFEVEYCKYGGGGSKGRLFQSWEEGGERDCCRGSDEDDQNMIGSSANSRKKLRLSREQSAFLEESFKEHHTLYPKQKLELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCETLTQENRKLQKELKDLRALKTTDSLYMHLPATTLTMCPSCERVATATVAATATAAMVQSRKEPMSKASGFSFTRTSSNS 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5047690 5049646 + evm.model.ptg000003l.1466 HCH6g0326 545820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0326 308 SUPERFAMILY Homeodomain-like 147 216 IPR009057 -
HCH6g0326 308 ProSitePatterns 'Homeobox' domain signature. 190 213 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH6g0326 308 SMART HOX_1 157 219 IPR001356 GO:0003677(InterPro)
HCH6g0326 308 CDD homeodomain 159 216 IPR001356 GO:0003677(InterPro)
HCH6g0326 308 Coils Coil 221 251 - -
HCH6g0326 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 29 289 IPR050762 -
HCH6g0326 308 MobiDBLite consensus disorder prediction 1 101 - -
HCH6g0326 308 FunFam Homeobox-leucine zipper protein 18 144 220 - -
HCH6g0326 308 SMART halz 215 258 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0326 308 MobiDBLite consensus disorder prediction 43 67 - -
HCH6g0326 308 Pfam Homeodomain 159 213 IPR001356 GO:0003677(InterPro)
HCH6g0326 308 Pfam Homeobox associated leucine zipper 215 249 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0326 308 Gene3D - 151 220 - -
HCH6g0326 308 ProSiteProfiles 'Homeobox' domain profile. 155 215 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0326 HCH-Chr6:5047690 HCH7g1755 HCH-Chr7:49218164 5.10E-46 dispersed
HCH4g1224 HCH-Chr4:8310070 HCH6g0326 HCH-Chr6:5047690 3.30E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33689 PF00046 Homeodomain 6.00E-15 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0326 K09338 - csv:101221600 263.077