Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0354 ATGGCATTAGCTAGGCGCGTGGGATCCACTCTCCCGGTCTTCAACAACTTATTGAAATCCGAATCGGTTTTCACTTCGCGATCGCTATCAAGGACTTATGCCGCTGCGTCGGGGAAAAAGGAGGAAAAAATCAAGGTACCCATTGCTTTGTTTGGGGGGTCTGGTAACTACGCCTCTGCTCTGTATATAGCTTCAGTAAAAGCTAACTCTTTAGACAAGGTTGAGTCTGAGCTTCTTAACCTTGTTGAGGCTGTTAAGAAAAGCCCTACATTTTCACAGTTCACAATGGATCTGTCAGTTCCTTCAGAAACTCGAGTTAAGGCTATTAGTGAAATTTCTACTGAAGCCAAATTTCCAGACATTGTAAAGAACTTTTTGGTTGTGCTGGCTGAGAATGGTAGGCTGAGATATGTAGACAGCATAGCAAAGAGATTTTTGGAGTTGACCATGGCTCATAGGGGAGAAGTTAAAGCAATTGTGACAACTGTTATTCCCATTCCACCAGAAGAGGAGAAAGAATTGAAGGAGACATTGCAAGATATTATTGGACAAGGCAAGAAGGTTAAGCTTGAGCAAAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGAGAGAAGGTATTCGATATGTCTATTAAAACCAGGGCACGTCAGATGGAGAGGTTCTTGCGCCAACCAATAAGCCTTGATGGCCTCTGA 708 43.08 MALARRVGSTLPVFNNLLKSESVFTSRSLSRTYAAASGKKEEKIKVPIALFGGSGNYASALYIASVKANSLDKVESELLNLVEAVKKSPTFSQFTMDLSVPSETRVKAISEISTEAKFPDIVKNFLVVLAENGRLRYVDSIAKRFLELTMAHRGEVKAIVTTVIPIPPEEEKELKETLQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPISLDGL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5594265 5603648 + evm.model.ptg000003l.1438 HCH6g0354 545848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0354 235 Hamap ATP synthase subunit delta [atpD]. 49 228 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 NCBIfam ATP synthase F1 subunit delta 56 225 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 188 207 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 PANTHER ATP SYNTHASE DELTA CHAIN 24 228 IPR000711 GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
HCH6g0354 235 PRINTS ATP synthase delta subunit signature 201 219 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 PRINTS ATP synthase delta subunit signature 123 134 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 PRINTS ATP synthase delta subunit signature 53 72 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 PRINTS ATP synthase delta subunit signature 186 201 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 PRINTS ATP synthase delta subunit signature 134 148 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
HCH6g0354 235 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 54 155 IPR026015 -
HCH6g0354 235 Gene3D - 52 146 IPR026015 -
HCH6g0354 235 Pfam ATP synthase delta (OSCP) subunit 55 224 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1195 HCH-Chr4:7995219 HCH6g0354 HCH-Chr6:5594265 1.30E-95 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0354 K02137 - rcu:8272168 316.62