Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0358 ATGTGCGGTGGTCCAGAGCAATCAAATTCTACATCTACTACGACAACAACCACACCTAACCCCAAAGATATGAATAATTTAACTGTTGATTGTGAAGATTCTTTTTATAGCTTATTGGAGCTTGCTTCTGACAATGATGCCGAAGGTGTTAAGCGTATGATAGATTCTGATTTGTTTTTAGTTAACAAATCTGGACCCTGGTATGTTCGCCAAAAAGGCTCAAAACAGGTTGTTCGTGAGCATAGAACGCCCCTGATGGTTGCTGCCATTTATGGTTGTGTGGATGTTCTGAAGCTTATATTGTCGTACCCTGAGGTTGATGTGAATCACTCATCTGGCATGGATAAGAGCACTGCTCTCCATTGTGCTGCTTCCAGTGGATCCGTGAATGTTGTTGAGATTGTTGATATGCTTTTATCTGCTGGTGCTGACCCAAATTTGAAGGATATTAATGGTAATCACCCTGTTGATGTTGTGTTTGTTCATCCAAAGTTGCAGGGGACAAGGTTCAGGCTTGAGGAACTTCTCAACAATTTTTCTCCCAATGGATCTGTAGACATGTGTTGTTTACATTTATCAATCAAAATGCCGGATTCAGAGTCACCAACACTTTCGTCATCATTAGAGGATGAGTTTCCATCACCACCTAAGTCGATCTCTTCTCCTGTGGATTTAAAATTTACTGATGGGTTTGTTAATGCTACAAAGGAGAAGAAAGAATATCCAGTTGATCCATCTCTTCCTGACATCAAGAATAGCATATATGCAACTGATGAGTTCCGTATGTTCTCATTCAAAGTTAGACCTTGTTCAAGGGCGTATTCTCATGATTGGACTGAATGCCCCTTTGTCCACCCAGGAGAGAATGCTCGCAGAAGAGACCCAAGGAAGTTTCACTACAGTTGTGTTCCTTGCCCTGATTTTCGTAAGGGAGCTTGTAGGCGTGGGGATATGTGCGAATACGCACATGGAGTATTTGAGTGTTGGCTTCACCCAGCTCAGTACCGGACTCGTCTCTGCAAGGATGGTACAAGTTGCAATAGACGGGTCTGTTTCTTTGCTCACACTAATGATGAGCTGCGGCCATTGTATGTGTCTACTGGATCTGCTGTTCCTTCCCCTCGATCAATTGGATCTGCCCCAACTGTGATGGACATGGCTACTGCATTGGGTCTTTTACCTGGTTCTCCTTCGTCGGTGTCGGCCCTATCTCCATCCCCATTTTCTCAATCCATGTCTCCCACATCAAATGGTGTGTCTCACTCTTCTGTGGCTTGGCAGCAGCCAAATGTACCAACCCTTCATCTTCCAGGAAGTAACCTTCAATCCAGCCGGTTGAGGTCGTCTCTTAATGCCAGGGATATGCCATTTGAGAATTTGAATGTTATGCCGGACTTTGATAATCAGCCACGGATATTTAATGACATGAACTGTTACTCTCAACCTCGTTCCAACTCTATCGCTGTGAGCCGATCTGGCTGGTCCCAAACTCTAACTCCTAACAATCTTGAAGATCTATTTTCTTCTGAGATCTCTTCATCCCCTCGATTTTCAGATCCAACAGCAGTTTCCGTTTTTTCCCCTACACGCAAATCGACTTTATTGAACCAATTCCAACAGCAGCAAAGCATGCTGTCACCCATTAATACTAGCATGATGTCTCCTATAAATGTCGATCATCCTTTATTGCAGGCGTCTTTTGGAAATTCATCACCGGGAAGGATGTCGCCAAGAAGCACTGACCAGGTATCCCCAATGGGATCTAGGTTCCCTGCCTTGGTACAGCGTGAAAAGCAACATCAACTCCGCACGCTCAGCTCAAGGGAACTCGGATCTAATATTCCGAGCTCCCTAATTGGATCTCCAGTTGGTTCTCTTCCTAAATGGGGGTCCCCTAATGGAAAAGTGGATTGGTCAGTTGGTAAGAATGAAATGGGTCAACTGCGTAGATCATCATCTTTTGAGATTGGGAATAATGGGGAGGAGCCGGATTTGTCATGGGTCCAATCCCTGGTAAAGGAATCCCCACCTGAGATGCTAAGAGAGAAGTTAGCAGTTCCTATGGTAGGTGCTGCGGCGGTGGCATCCGGTGAGGGTCTAACCACTAAATCACAATTAGAATCTACTGATCATTCTGTCATTGGAGCTTGGCTTGAGCAGATGCAGCTTGATCAACTTGTAGTGTAG 2187 44.67 MCGGPEQSNSTSTTTTTTPNPKDMNNLTVDCEDSFYSLLELASDNDAEGVKRMIDSDLFLVNKSGPWYVRQKGSKQVVREHRTPLMVAAIYGCVDVLKLILSYPEVDVNHSSGMDKSTALHCAASSGSVNVVEIVDMLLSAGADPNLKDINGNHPVDVVFVHPKLQGTRFRLEELLNNFSPNGSVDMCCLHLSIKMPDSESPTLSSSLEDEFPSPPKSISSPVDLKFTDGFVNATKEKKEYPVDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTNDELRPLYVSTGSAVPSPRSIGSAPTVMDMATALGLLPGSPSSVSALSPSPFSQSMSPTSNGVSHSSVAWQQPNVPTLHLPGSNLQSSRLRSSLNARDMPFENLNVMPDFDNQPRIFNDMNCYSQPRSNSIAVSRSGWSQTLTPNNLEDLFSSEISSSPRFSDPTAVSVFSPTRKSTLLNQFQQQQSMLSPINTSMMSPINVDHPLLQASFGNSSPGRMSPRSTDQVSPMGSRFPALVQREKQHQLRTLSSRELGSNIPSSLIGSPVGSLPKWGSPNGKVDWSVGKNEMGQLRRSSSFEIGNNGEEPDLSWVQSLVKESPPEMLREKLAVPMVGAAAVASGEGLTTKSQLESTDHSVIGAWLEQMQLDQLVV 728
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5775836 5778022 - evm.model.ptg000003l.1434 HCH6g0358 545852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0358 728 ProSiteProfiles Ankyrin repeat region circular profile. 115 149 - -
HCH6g0358 728 MobiDBLite consensus disorder prediction 1 26 - -
HCH6g0358 728 MobiDBLite consensus disorder prediction 403 423 - -
HCH6g0358 728 Gene3D - 299 362 - -
HCH6g0358 728 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 324 IPR000571 GO:0046872(InterPro)
HCH6g0358 728 FunFam Zinc finger CCCH domain-containing protein 66 257 325 - -
HCH6g0358 728 PRINTS Ankyrin repeat signature 116 131 IPR002110 GO:0005515(InterPro)
HCH6g0358 728 PRINTS Ankyrin repeat signature 134 148 IPR002110 GO:0005515(InterPro)
HCH6g0358 728 ProSiteProfiles Ankyrin repeat profile. 115 150 IPR002110 GO:0005515(InterPro)
HCH6g0358 728 SUPERFAMILY Ankyrin repeat 79 160 IPR036770 -
HCH6g0358 728 Pfam Ankyrin repeats (3 copies) 43 149 IPR002110 GO:0005515(InterPro)
HCH6g0358 728 ProSiteProfiles Zinc finger C3H1-type profile. 304 326 IPR000571 GO:0046872(InterPro)
HCH6g0358 728 PANTHER UNKEMPT FAMILY MEMBER 70 676 IPR045234 -
HCH6g0358 728 Gene3D - 5 207 IPR036770 -
HCH6g0358 728 SMART ANK_2a 80 110 IPR002110 GO:0005515(InterPro)
HCH6g0358 728 SMART ANK_2a 115 147 IPR002110 GO:0005515(InterPro)
HCH6g0358 728 SMART c3hfinal6 334 357 IPR000571 GO:0046872(InterPro)
HCH6g0358 728 SMART c3hfinal6 299 325 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0656 HCH-Chr11:29146192 HCH6g0358 HCH-Chr6:5775836 2.10E-257 dispersed
HCH6g0358 HCH-Chr6:5775836 HCH8g0682 HCH-Chr8:43524013 3.30E-51 dispersed
HCH6g0358 HCH-Chr6:5775836 HCH2g1018 HCH-Chr2:53400203 2.30E-121 transposed
HCH6g0358 HCH-Chr6:5775836 HCH1g0362 HCH-Chr1:50648123 2.30E-121 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33691 PF12796 Ank_2 3.00E-11 CL0465 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0358 - - - 0.0