Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0377 | ATGGGTAGAGGAAAGATTGAGATAAAGAGGATTGAGAATGCCAATAGTCGTCAAGTTACATTTTCAAAGAGGAGAGCTGGGTTGCTTAAGAAAGCTCATGAACTTGCTATTCTTTGTGATTCTGAAGTTGCTGTCATTATTTTCTCCAATACTGGCAAGCTTTTTGAGTTTTCAAGTTCTGGCATGAAGCATACTCTTTCGAGATACAACAGGTGTGTAGATTCTTCAGAGGCTGCAGCAGATGGGCACAAGGTTGAGAAGCAAGAATACGAGGAGGTAGACATGTTAAAAGACGAAATAACAACTCTACAAATGAAACAATTACAACTGATGGGAAAGGACCTGAGTGGCTTAGGCTACAAAGACTTGCAGAACCTGGAGCAACAACTAAATGAGGGGTTATTAATAGTGAAGGAGAAGAAGGAAAAATTACTGATGGAGCAACTGGAACAATCAAGGGCACAGGAGCAACGAGCTATGCTGGAGAACGAAACTTTGCGGAGACAGGTGAATGAGCTCCGATGTCTATTTCCGCCAGCTGACTGTCAATTTCCTGCTTATCTTGAATACTGCTCTCTAGAACAAAAGAACATTGGCATTAGAAGTCCTGATGCGGCCGGCAATTCCGAAATAGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCCGCCATCTCATGTTTATTGCTCGAGAAAGAATGCCGAGAGAGATATGCATTCCAACGATTCGGGGAGCCAAATGGCCCTACTCTGA | 756 | 43.39 | MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELAILCDSEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVDSSEAAADGHKVEKQEYEEVDMLKDEITTLQMKQLQLMGKDLSGLGYKDLQNLEQQLNEGLLIVKEKKEKLLMEQLEQSRAQEQRAMLENETLRRQVNELRCLFPPADCQFPAYLEYCSLEQKNIGIRSPDAAGNSEIERGDSDTTLHLGPPSHVYCSRKNAERDMHSNDSGSQMALL | 251 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6478665 | 6483275 | - | evm.model.ptg000003l.1415 | HCH6g0377 | 545871 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0377 | 251 | SUPERFAMILY | SRF-like | 2 | 75 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | CDD | MADS_MEF2_like | 2 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| HCH6g0377 | 251 | MobiDBLite | consensus disorder prediction | 202 | 225 | - | - | |
| HCH6g0377 | 251 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | ProSiteProfiles | K-box domain profile. | 86 | 176 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| HCH6g0377 | 251 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 207 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| HCH6g0377 | 251 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | Coils | Coil | 123 | 176 | - | - | |
| HCH6g0377 | 251 | FunFam | MADS-box transcription factor MADS-MC | 13 | 85 | - | - | |
| HCH6g0377 | 251 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | Pfam | K-box region | 83 | 170 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| HCH6g0377 | 251 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| HCH6g0377 | 251 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH4g1682 | HCH-Chr4:18444783 | HCH6g0377 | HCH-Chr6:6478665 | 1.20E-17 | dispersed | |
| HCH6g0377 | HCH-Chr6:6478665 | HCH9g1054 | HCH-Chr9:8947294 | 6.90E-41 | dispersed | |
| HCH6g0377 | HCH-Chr6:6478665 | HCH12g0712 | HCH-Chr12:4438182 | 6.30E-34 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33692 | PF01486 | K-box | 1.00E-18 | No_clan | HCH | TF |
Pathway information