Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0377 ATGGGTAGAGGAAAGATTGAGATAAAGAGGATTGAGAATGCCAATAGTCGTCAAGTTACATTTTCAAAGAGGAGAGCTGGGTTGCTTAAGAAAGCTCATGAACTTGCTATTCTTTGTGATTCTGAAGTTGCTGTCATTATTTTCTCCAATACTGGCAAGCTTTTTGAGTTTTCAAGTTCTGGCATGAAGCATACTCTTTCGAGATACAACAGGTGTGTAGATTCTTCAGAGGCTGCAGCAGATGGGCACAAGGTTGAGAAGCAAGAATACGAGGAGGTAGACATGTTAAAAGACGAAATAACAACTCTACAAATGAAACAATTACAACTGATGGGAAAGGACCTGAGTGGCTTAGGCTACAAAGACTTGCAGAACCTGGAGCAACAACTAAATGAGGGGTTATTAATAGTGAAGGAGAAGAAGGAAAAATTACTGATGGAGCAACTGGAACAATCAAGGGCACAGGAGCAACGAGCTATGCTGGAGAACGAAACTTTGCGGAGACAGGTGAATGAGCTCCGATGTCTATTTCCGCCAGCTGACTGTCAATTTCCTGCTTATCTTGAATACTGCTCTCTAGAACAAAAGAACATTGGCATTAGAAGTCCTGATGCGGCCGGCAATTCCGAAATAGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCCGCCATCTCATGTTTATTGCTCGAGAAAGAATGCCGAGAGAGATATGCATTCCAACGATTCGGGGAGCCAAATGGCCCTACTCTGA 756 43.39 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAHELAILCDSEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVDSSEAAADGHKVEKQEYEEVDMLKDEITTLQMKQLQLMGKDLSGLGYKDLQNLEQQLNEGLLIVKEKKEKLLMEQLEQSRAQEQRAMLENETLRRQVNELRCLFPPADCQFPAYLEYCSLEQKNIGIRSPDAAGNSEIERGDSDTTLHLGPPSHVYCSRKNAERDMHSNDSGSQMALL 251
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
6 6478665 6483275 - evm.model.ptg000003l.1415 HCH6g0377 545871
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0377 251 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH6g0377 251 MobiDBLite consensus disorder prediction 202 225 - -
HCH6g0377 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH6g0377 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH6g0377 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 Coils Coil 123 176 - -
HCH6g0377 251 FunFam MADS-box transcription factor MADS-MC 13 85 - -
HCH6g0377 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 Pfam K-box region 83 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH6g0377 251 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH6g0377 251 Gene3D - 14 93 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1682 HCH-Chr4:18444783 HCH6g0377 HCH-Chr6:6478665 1.20E-17 dispersed
HCH6g0377 HCH-Chr6:6478665 HCH9g1054 HCH-Chr9:8947294 6.90E-41 dispersed
HCH6g0377 HCH-Chr6:6478665 HCH12g0712 HCH-Chr12:4438182 6.30E-34 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33692 PF01486 K-box 1.00E-18 No_clan HCH TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0377 - - - 0.0