Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0384 ATGGGTCAAAATCAAAAGAAGCCGACTTTTGCTGAGCTAGGAGAGGGACCTCCGATTTTAGAACCATCTCCACTTCAAGTTGAGGAGTCACCTGAAGAAGAGACGAAGGAATCGGCTGCAGCAAGGAAGAAGAGAAAGAAAAAGGACAAGGAAAAAGAAAAAAAGGCTGCAACTGTTTCTGAGCTTAATGATGAGAAGAAGATGGATGATGTGAAGAAAGTGCCAGAGAAGAAAGTACTAAAGCATGTTAGGTATATGCAAGAGGCCTTAGCTAGAAGAAACCAAAGGAAAATGATAGAAGAAGAGAGGTTGAGGAAAGAACAAGAAGAGTGGCTTAGGCAAGAAGAGCTTCAAAAACAAGCTGAAGAGGCTAAGCGTATGAAAAAGCAAAGAGAAAAAGAAAAGATACTACTAAAGAAAAAGGAAGGCAAGTTGTTAACAGGGAAACAGAAAACGGAAAAACTAAGGTTGGAGGCAATCAGGAATCAATTCCTATCAAGTGCTCGGGGTTTACCTCCGATTACATCTCCTCCTAGTAGACCAGCTAAACGTCCTAAATACCAGACTAAGAAGACACGACCGGGACATTGTCAAGCAAATGGTAGTCCCCAAGCTGAGCCAGTGAAACATGTACAAGAAAAAGACTTGGCACATATTAAATCTTTGGAGTCTGAGAAGATGGAAGCTATGGAGTCGATGCTTGTAGAGGAAAAATCATATGTTACTGAGGCTATTGAAGAGGATGAGGACAAGGACCAATGGGATGCTAATAATCGGGATGATTCCGTCCTCAATCTTTCTTTAATAAGTTCCTTTGCTGATGAAGAAGTTATTTCAGAGCTTGACATTGGATTGAAAAATGATAGAACAAATACTGCATCAATATTACCGGCTGAAGCTAAAGGTCCCTACCCAACTCGCCCTGCGCGAAAAACTTTACCTTCTCAGCCTGTAAAATCTTCAGATATTGAAAGTAAGAAGCAGGATGAGGTCGAGGTTGTCGACAAGGACGGAAGAAAACAAGATGCTGTCAAGAAGAAAGCTCCAACTCCTGATGCTACTCCTAAACAAGAAGAAAATCTCCGCTCACCCATTTGTTGCATTATGGGCCATGTGGATGCTGGTAAAACCAAGCTACTGGACTGTATTCGCGGTACAAACGTGCAGGAGGGTGAGGCTGGAGGTATTACTCAGCAGATTGGAGCAACATATTTTCCTGCAGAGAACATTCTCGAAAGAACTAGGAAACTGAAAGCTTCAGCAATGCTGAAGGTTCCTGGCCTAGTCGTTATTGATACCCCTGGGCACGAATCCTTCGCAAACTTACGTTCTCGTGGTTCCAGTTTATGTGATATTGCCATTTTGGTTGTTGACATTATGCATGGCTTAGAACCACAAACAATAGAATCACTTAATCTCTTGAAAATGAGGAACACAGAATTCATTGTTGCTTTGAATAAGGTGGACAGGCTTTATGGTTGGAAAAAAAAACGTAATGCACCCTTGCGCAAGACGTGGAAGCAACAATCCAAGGATGTACAAGAGGAGTTCAATACAAGGCTTTCTCAGATTATCACTCAGTTTAAAGAACAGGGTGTGAATACTGACTTGTATTGGAATAGAAACAAAATAACAGGGGAGGGTCTGGAGACTTTCTATATATTTCCTACAAGTGCCATCAGTGGTGAAGGAATCCCAGACTTGCTATTGTTCTTGGTGTTGTGGGCTCAGAAAACCATGAGCAAGAAACTTATGTATAGAGATGAAGTGCAGTGTACTGTATTGGAGGTCAAGGTGGTTGAAGGCCATGGGACAACTATTGATGTCATATTGGTCAACGGCATGTTGCATGAAGGAGATCAAATAGTAGTTTGTGGCATGCAGGGCCCAATTGTTACTTCGATTCGAGCGCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTTAAGGGAGCATATCTACATCATAAGGAAATCAAGGCTGCTCAGGGTATCAAAATTGCTGGAAAGGGCCTTGAGCATGCTATTTCTGGAACTGGTCTTTATGTCGTTGGTCCTGAGGATGACTTGGACTGCATCAAGGCATCAGTTATGGACGATATGAATTCAATCTTGTGCAGGATTGACAAGAGTGGTGAAGGAGTCTGCATCCAAGCATCTACAGTAGGTTCCTTGGAAGCGTTGCTGGAGTTTTTGAAGTCCCCAGCAGTGAACATTCCTGTTAGTGGAATAGGTATAGGACCTGTTCATAGAAAAGATGTCCTTAAAGCTCACGTGATGCTTGACAGAAAGAAAAAAAAAAATGCTGTTATCTTGGCTTTTGATGTGAAAGTGACAAAAATAGCTAAAAAACTTGCTAGAAAAGGAGTGAAGATTTTTACTGCTGACGTCATTTATCACTTGGTCGATCAATATATGGCCTATATTCATGATCTTAAAGAGAGAGAAAAAGAGAAGGAAGTTGCCAAGAGGAAGGTCGTCTTCCCTTGTGTTCTCAAGATTTTGCCAAATTGCATTTTCAACAAGAAGGATCCGATTGTCTTGGGGGTTGATGTTATTGAAGGCATTGCCAAGGTTGGCACACCACTTTGTTTTCTTCAAAGTGAATTTATCGACATTGGTCGTATTGCATCTATTGAAAATAACCACAATCCTGTTGATTATGCAAAGAAAGGGCAGAAGATAGCCATTAAGATAGTTGGGAATTCTTTGGAGGAGCAGCAAAAAATGTATGGTAGGCATTTTAATTTGGATGATGAACTTGTCAGCCATATATCAAGGGAGTCTGTTGATATAATAGAATCCACATATCGGGATGATTTGTGCGTGGATGAGTGGAGGCTGTTGGAGAAGTTGAAGATCCTTTTTGAGATAGGATGA 2880 41.46 MGQNQKKPTFAELGEGPPILEPSPLQVEESPEEETKESAAARKKRKKKDKEKEKKAATVSELNDEKKMDDVKKVPEKKVLKHVRYMQEALARRNQRKMIEEERLRKEQEEWLRQEELQKQAEEAKRMKKQREKEKILLKKKEGKLLTGKQKTEKLRLEAIRNQFLSSARGLPPITSPPSRPAKRPKYQTKKTRPGHCQANGSPQAEPVKHVQEKDLAHIKSLESEKMEAMESMLVEEKSYVTEAIEEDEDKDQWDANNRDDSVLNLSLISSFADEEVISELDIGLKNDRTNTASILPAEAKGPYPTRPARKTLPSQPVKSSDIESKKQDEVEVVDKDGRKQDAVKKKAPTPDATPKQEENLRSPICCIMGHVDAGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENILERTRKLKASAMLKVPGLVVIDTPGHESFANLRSRGSSLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKKKRNAPLRKTWKQQSKDVQEEFNTRLSQIITQFKEQGVNTDLYWNRNKITGEGLETFYIFPTSAISGEGIPDLLLFLVLWAQKTMSKKLMYRDEVQCTVLEVKVVEGHGTTIDVILVNGMLHEGDQIVVCGMQGPIVTSIRALLTPHPMKELRVKGAYLHHKEIKAAQGIKIAGKGLEHAISGTGLYVVGPEDDLDCIKASVMDDMNSILCRIDKSGEGVCIQASTVGSLEALLEFLKSPAVNIPVSGIGIGPVHRKDVLKAHVMLDRKKKKNAVILAFDVKVTKIAKKLARKGVKIFTADVIYHLVDQYMAYIHDLKEREKEKEVAKRKVVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPLCFLQSEFIDIGRIASIENNHNPVDYAKKGQKIAIKIVGNSLEEQQKMYGRHFNLDDELVSHISRESVDIIESTYRDDLCVDEWRLLEKLKILFEIG 959
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7013163 7019082 + evm.model.ptg000003l.1408 HCH6g0384 545878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0384 959 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 361 581 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g0384 959 Pfam Elongation factor Tu GTP binding domain 364 576 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g0384 959 Pfam Elongation factor Tu domain 4 829 904 IPR029459 -
HCH6g0384 959 CDD IF2_eIF5B 364 578 - -
HCH6g0384 959 Gene3D Translation factors 588 706 - -
HCH6g0384 959 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 693 820 IPR036925 -
HCH6g0384 959 PRINTS GTP-binding elongation factor signature 481 490 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g0384 959 PRINTS GTP-binding elongation factor signature 365 378 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g0384 959 PRINTS GTP-binding elongation factor signature 429 439 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g0384 959 PRINTS GTP-binding elongation factor signature 445 456 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
HCH6g0384 959 NCBIfam small GTP-binding protein domain 366 491 IPR005225 GO:0005525(InterPro)
HCH6g0384 959 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 656 IPR027417 -
HCH6g0384 959 CDD aeIF5B_II 589 699 - -
HCH6g0384 959 SUPERFAMILY Translation proteins 826 953 IPR009000 -
HCH6g0384 959 FunFam Eukaryotic translation initiation factor 5B 822 959 - -
HCH6g0384 959 FunFam Eukaryotic translation initiation factor 5B 707 813 - -
HCH6g0384 959 MobiDBLite consensus disorder prediction 1 70 - -
HCH6g0384 959 Coils Coil 112 144 - -
HCH6g0384 959 Gene3D Translation factors 822 959 - -
HCH6g0384 959 Pfam Translation-initiation factor 2 701 805 IPR023115 -
HCH6g0384 959 MobiDBLite consensus disorder prediction 322 353 - -
HCH6g0384 959 FunFam Eukaryotic translation initiation factor 5B 355 587 - -
HCH6g0384 959 Coils Coil 90 110 - -
HCH6g0384 959 Gene3D - 707 813 IPR036925 -
HCH6g0384 959 MobiDBLite consensus disorder prediction 294 359 - -
HCH6g0384 959 CDD IF2_aeIF5B_IV 830 925 - -
HCH6g0384 959 FunFam eukaryotic translation initiation factor 5B 588 707 - -
HCH6g0384 959 Coils Coil 45 65 - -
HCH6g0384 959 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 36 958 IPR015760 GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER)
HCH6g0384 959 MobiDBLite consensus disorder prediction 52 70 - -
HCH6g0384 959 MobiDBLite consensus disorder prediction 166 210 - -
HCH6g0384 959 Gene3D - 355 587 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g1441 HCH-Chr12:38881657 HCH6g0384 HCH-Chr6:7013163 0.00E+00 dispersed
HCH6g0384 HCH-Chr6:7013163 HCH6g1242 HCH-Chr6:46784390 2.20E-31 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0384 K03243 - csv:101204360 1234.17