Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0384 | ATGGGTCAAAATCAAAAGAAGCCGACTTTTGCTGAGCTAGGAGAGGGACCTCCGATTTTAGAACCATCTCCACTTCAAGTTGAGGAGTCACCTGAAGAAGAGACGAAGGAATCGGCTGCAGCAAGGAAGAAGAGAAAGAAAAAGGACAAGGAAAAAGAAAAAAAGGCTGCAACTGTTTCTGAGCTTAATGATGAGAAGAAGATGGATGATGTGAAGAAAGTGCCAGAGAAGAAAGTACTAAAGCATGTTAGGTATATGCAAGAGGCCTTAGCTAGAAGAAACCAAAGGAAAATGATAGAAGAAGAGAGGTTGAGGAAAGAACAAGAAGAGTGGCTTAGGCAAGAAGAGCTTCAAAAACAAGCTGAAGAGGCTAAGCGTATGAAAAAGCAAAGAGAAAAAGAAAAGATACTACTAAAGAAAAAGGAAGGCAAGTTGTTAACAGGGAAACAGAAAACGGAAAAACTAAGGTTGGAGGCAATCAGGAATCAATTCCTATCAAGTGCTCGGGGTTTACCTCCGATTACATCTCCTCCTAGTAGACCAGCTAAACGTCCTAAATACCAGACTAAGAAGACACGACCGGGACATTGTCAAGCAAATGGTAGTCCCCAAGCTGAGCCAGTGAAACATGTACAAGAAAAAGACTTGGCACATATTAAATCTTTGGAGTCTGAGAAGATGGAAGCTATGGAGTCGATGCTTGTAGAGGAAAAATCATATGTTACTGAGGCTATTGAAGAGGATGAGGACAAGGACCAATGGGATGCTAATAATCGGGATGATTCCGTCCTCAATCTTTCTTTAATAAGTTCCTTTGCTGATGAAGAAGTTATTTCAGAGCTTGACATTGGATTGAAAAATGATAGAACAAATACTGCATCAATATTACCGGCTGAAGCTAAAGGTCCCTACCCAACTCGCCCTGCGCGAAAAACTTTACCTTCTCAGCCTGTAAAATCTTCAGATATTGAAAGTAAGAAGCAGGATGAGGTCGAGGTTGTCGACAAGGACGGAAGAAAACAAGATGCTGTCAAGAAGAAAGCTCCAACTCCTGATGCTACTCCTAAACAAGAAGAAAATCTCCGCTCACCCATTTGTTGCATTATGGGCCATGTGGATGCTGGTAAAACCAAGCTACTGGACTGTATTCGCGGTACAAACGTGCAGGAGGGTGAGGCTGGAGGTATTACTCAGCAGATTGGAGCAACATATTTTCCTGCAGAGAACATTCTCGAAAGAACTAGGAAACTGAAAGCTTCAGCAATGCTGAAGGTTCCTGGCCTAGTCGTTATTGATACCCCTGGGCACGAATCCTTCGCAAACTTACGTTCTCGTGGTTCCAGTTTATGTGATATTGCCATTTTGGTTGTTGACATTATGCATGGCTTAGAACCACAAACAATAGAATCACTTAATCTCTTGAAAATGAGGAACACAGAATTCATTGTTGCTTTGAATAAGGTGGACAGGCTTTATGGTTGGAAAAAAAAACGTAATGCACCCTTGCGCAAGACGTGGAAGCAACAATCCAAGGATGTACAAGAGGAGTTCAATACAAGGCTTTCTCAGATTATCACTCAGTTTAAAGAACAGGGTGTGAATACTGACTTGTATTGGAATAGAAACAAAATAACAGGGGAGGGTCTGGAGACTTTCTATATATTTCCTACAAGTGCCATCAGTGGTGAAGGAATCCCAGACTTGCTATTGTTCTTGGTGTTGTGGGCTCAGAAAACCATGAGCAAGAAACTTATGTATAGAGATGAAGTGCAGTGTACTGTATTGGAGGTCAAGGTGGTTGAAGGCCATGGGACAACTATTGATGTCATATTGGTCAACGGCATGTTGCATGAAGGAGATCAAATAGTAGTTTGTGGCATGCAGGGCCCAATTGTTACTTCGATTCGAGCGCTATTGACGCCCCATCCAATGAAGGAACTCCGAGTTAAGGGAGCATATCTACATCATAAGGAAATCAAGGCTGCTCAGGGTATCAAAATTGCTGGAAAGGGCCTTGAGCATGCTATTTCTGGAACTGGTCTTTATGTCGTTGGTCCTGAGGATGACTTGGACTGCATCAAGGCATCAGTTATGGACGATATGAATTCAATCTTGTGCAGGATTGACAAGAGTGGTGAAGGAGTCTGCATCCAAGCATCTACAGTAGGTTCCTTGGAAGCGTTGCTGGAGTTTTTGAAGTCCCCAGCAGTGAACATTCCTGTTAGTGGAATAGGTATAGGACCTGTTCATAGAAAAGATGTCCTTAAAGCTCACGTGATGCTTGACAGAAAGAAAAAAAAAAATGCTGTTATCTTGGCTTTTGATGTGAAAGTGACAAAAATAGCTAAAAAACTTGCTAGAAAAGGAGTGAAGATTTTTACTGCTGACGTCATTTATCACTTGGTCGATCAATATATGGCCTATATTCATGATCTTAAAGAGAGAGAAAAAGAGAAGGAAGTTGCCAAGAGGAAGGTCGTCTTCCCTTGTGTTCTCAAGATTTTGCCAAATTGCATTTTCAACAAGAAGGATCCGATTGTCTTGGGGGTTGATGTTATTGAAGGCATTGCCAAGGTTGGCACACCACTTTGTTTTCTTCAAAGTGAATTTATCGACATTGGTCGTATTGCATCTATTGAAAATAACCACAATCCTGTTGATTATGCAAAGAAAGGGCAGAAGATAGCCATTAAGATAGTTGGGAATTCTTTGGAGGAGCAGCAAAAAATGTATGGTAGGCATTTTAATTTGGATGATGAACTTGTCAGCCATATATCAAGGGAGTCTGTTGATATAATAGAATCCACATATCGGGATGATTTGTGCGTGGATGAGTGGAGGCTGTTGGAGAAGTTGAAGATCCTTTTTGAGATAGGATGA | 2880 | 41.46 | MGQNQKKPTFAELGEGPPILEPSPLQVEESPEEETKESAAARKKRKKKDKEKEKKAATVSELNDEKKMDDVKKVPEKKVLKHVRYMQEALARRNQRKMIEEERLRKEQEEWLRQEELQKQAEEAKRMKKQREKEKILLKKKEGKLLTGKQKTEKLRLEAIRNQFLSSARGLPPITSPPSRPAKRPKYQTKKTRPGHCQANGSPQAEPVKHVQEKDLAHIKSLESEKMEAMESMLVEEKSYVTEAIEEDEDKDQWDANNRDDSVLNLSLISSFADEEVISELDIGLKNDRTNTASILPAEAKGPYPTRPARKTLPSQPVKSSDIESKKQDEVEVVDKDGRKQDAVKKKAPTPDATPKQEENLRSPICCIMGHVDAGKTKLLDCIRGTNVQEGEAGGITQQIGATYFPAENILERTRKLKASAMLKVPGLVVIDTPGHESFANLRSRGSSLCDIAILVVDIMHGLEPQTIESLNLLKMRNTEFIVALNKVDRLYGWKKKRNAPLRKTWKQQSKDVQEEFNTRLSQIITQFKEQGVNTDLYWNRNKITGEGLETFYIFPTSAISGEGIPDLLLFLVLWAQKTMSKKLMYRDEVQCTVLEVKVVEGHGTTIDVILVNGMLHEGDQIVVCGMQGPIVTSIRALLTPHPMKELRVKGAYLHHKEIKAAQGIKIAGKGLEHAISGTGLYVVGPEDDLDCIKASVMDDMNSILCRIDKSGEGVCIQASTVGSLEALLEFLKSPAVNIPVSGIGIGPVHRKDVLKAHVMLDRKKKKNAVILAFDVKVTKIAKKLARKGVKIFTADVIYHLVDQYMAYIHDLKEREKEKEVAKRKVVFPCVLKILPNCIFNKKDPIVLGVDVIEGIAKVGTPLCFLQSEFIDIGRIASIENNHNPVDYAKKGQKIAIKIVGNSLEEQQKMYGRHFNLDDELVSHISRESVDIIESTYRDDLCVDEWRLLEKLKILFEIG | 959 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7013163 | 7019082 | + | evm.model.ptg000003l.1408 | HCH6g0384 | 545878 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0384 | 959 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 361 | 581 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
HCH6g0384 | 959 | Pfam | Elongation factor Tu GTP binding domain | 364 | 576 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
HCH6g0384 | 959 | Pfam | Elongation factor Tu domain 4 | 829 | 904 | IPR029459 | - | |
HCH6g0384 | 959 | CDD | IF2_eIF5B | 364 | 578 | - | - | |
HCH6g0384 | 959 | Gene3D | Translation factors | 588 | 706 | - | - | |
HCH6g0384 | 959 | SUPERFAMILY | Initiation factor IF2/eIF5b, domain 3 | 693 | 820 | IPR036925 | - | |
HCH6g0384 | 959 | PRINTS | GTP-binding elongation factor signature | 481 | 490 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
HCH6g0384 | 959 | PRINTS | GTP-binding elongation factor signature | 365 | 378 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
HCH6g0384 | 959 | PRINTS | GTP-binding elongation factor signature | 429 | 439 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
HCH6g0384 | 959 | PRINTS | GTP-binding elongation factor signature | 445 | 456 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
HCH6g0384 | 959 | NCBIfam | small GTP-binding protein domain | 366 | 491 | IPR005225 | GO:0005525(InterPro) | |
HCH6g0384 | 959 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 359 | 656 | IPR027417 | - | |
HCH6g0384 | 959 | CDD | aeIF5B_II | 589 | 699 | - | - | |
HCH6g0384 | 959 | SUPERFAMILY | Translation proteins | 826 | 953 | IPR009000 | - | |
HCH6g0384 | 959 | FunFam | Eukaryotic translation initiation factor 5B | 822 | 959 | - | - | |
HCH6g0384 | 959 | FunFam | Eukaryotic translation initiation factor 5B | 707 | 813 | - | - | |
HCH6g0384 | 959 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
HCH6g0384 | 959 | Coils | Coil | 112 | 144 | - | - | |
HCH6g0384 | 959 | Gene3D | Translation factors | 822 | 959 | - | - | |
HCH6g0384 | 959 | Pfam | Translation-initiation factor 2 | 701 | 805 | IPR023115 | - | |
HCH6g0384 | 959 | MobiDBLite | consensus disorder prediction | 322 | 353 | - | - | |
HCH6g0384 | 959 | FunFam | Eukaryotic translation initiation factor 5B | 355 | 587 | - | - | |
HCH6g0384 | 959 | Coils | Coil | 90 | 110 | - | - | |
HCH6g0384 | 959 | Gene3D | - | 707 | 813 | IPR036925 | - | |
HCH6g0384 | 959 | MobiDBLite | consensus disorder prediction | 294 | 359 | - | - | |
HCH6g0384 | 959 | CDD | IF2_aeIF5B_IV | 830 | 925 | - | - | |
HCH6g0384 | 959 | FunFam | eukaryotic translation initiation factor 5B | 588 | 707 | - | - | |
HCH6g0384 | 959 | Coils | Coil | 45 | 65 | - | - | |
HCH6g0384 | 959 | PANTHER | TRANSLATION INITIATION FACTOR IF-2-RELATED | 36 | 958 | IPR015760 | GO:0003743(PANTHER)|GO:0005737(PANTHER)|GO:0005739(PANTHER)|GO:0006413(PANTHER) | |
HCH6g0384 | 959 | MobiDBLite | consensus disorder prediction | 52 | 70 | - | - | |
HCH6g0384 | 959 | MobiDBLite | consensus disorder prediction | 166 | 210 | - | - | |
HCH6g0384 | 959 | Gene3D | - | 355 | 587 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g1441 | HCH-Chr12:38881657 | HCH6g0384 | HCH-Chr6:7013163 | 0.00E+00 | dispersed | |
HCH6g0384 | HCH-Chr6:7013163 | HCH6g1242 | HCH-Chr6:46784390 | 2.20E-31 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0384 | K03243 | - | csv:101204360 | 1234.17 |