Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0399 ATGGCGGCCACAGCCACAACTAGTGTAGTCCCGGCGAATCGACGGCGAGCAATCACCGCGCCGGAAGACAAACTAGAATTCGAAACGACCGAAGGAGTTGAGCCAATCTTGAGTTTCGATCAAATGGGGATTAAGGACGACCTTCTCCGTGGAATTTACGCTTATGGGTTTGAAAAACCCTCTGCTATTCAACAAAGAGCTGTTAGACCTATTATCGAGGGAAGAGATGTAATTGCTCAAGCTCAATCTGGAACGGGAAAGACTTCTATGATTGCCCTAACTGTTTGCCAAATGGTCGATACTTCTAATAGAGAGGTACAAGCCTTGATCTTGTCACCTACGAGGGAATTGGCAACTCAGACGGAGAAAGTGATATTGGCAATTGGTGACTACATTAATATACAAGCACACTCATGTATTGGTGGCAAAAGTGTGGGTGAAGATATCAGAAAGCTTGAATATGGAGTTCATGTTGTGTCGGGAACTCCTGGGAGAGTCTGTGACATGATAAAGAGAAGAACATTGCGTACTAGAGCTATTAAGTTACTAATTCTTGATGAGTCTGACGAGATGTTGAGCAGGGGATTTAAAGACCAAATTTATGATGTGTATAGATATCTCCCACCAGAACTTCAGGTTGTCTTGATTTCTGCTACCCTTCCTCATGAAATTCTGGAGATAACAAACAAGTTTATGACGGATCCTGTGAGAATCCTTGTCAAGCGTGATGAGTTAACTTTAGAGGGCATTAAGCAATTTTTTGTTGCAGTTGAAAGGGAAGAGTGGAAGTTTGATACGTTATGTGATCTTTATGACACCTTGACCATTACTCAAGCTGTTATTTTCTGTAACACTAAGCGGAAGGTTGAATGGTTAACTGAGAAGATGCGTAGTAATAACTTTACTGTTTCACATATGCATGGGGACATGCCTCAAAGAGAAAGAGATGCAATCATGGGAGAGTTTCGATCAGGAACTACTCGTGTCCTGATCACCACGGATGTTTGGGCACGAGGGATTGATGTCCAGCAGGTATCACTAGTGATAAATTATGACCTTCCAAACAATCGTGAACTTTACATTCACAGAATCGGGAGGTCTGGTCGTTTTGGCCGCAAGGGTGTTGCCATTAACTTCGTCAAAAGTGATGACATCAAAATCCTGAGGGATATTGAGCAATACTACAGCACCCAGATTGATGAGATGCCGATGAACGTTGCGGATTTGATATAA 1233 42.66 MAATATTSVVPANRRRAITAPEDKLEFETTEGVEPILSFDQMGIKDDLLRGIYAYGFEKPSAIQQRAVRPIIEGRDVIAQAQSGTGKTSMIALTVCQMVDTSNREVQALILSPTRELATQTEKVILAIGDYINIQAHSCIGGKSVGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEITNKFMTDPVRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVEWLTEKMRSNNFTVSHMHGDMPQRERDAIMGEFRSGTTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7813549 7818100 + evm.model.ptg000003l.1393 HCH6g0399 545893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0399 410 SMART ultradead3 56 253 IPR014001 -
HCH6g0399 410 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 31 395 - GO:0003723(PANTHER)|GO:0003724(PANTHER)|GO:0003729(PANTHER)|GO:0005730(PANTHER)|GO:0071013(PANTHER)
HCH6g0399 410 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 249 410 IPR001650 -
HCH6g0399 410 Pfam Helicase conserved C-terminal domain 263 371 IPR001650 -
HCH6g0399 410 SMART helicmild6 290 371 IPR001650 -
HCH6g0399 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 393 IPR027417 -
HCH6g0399 410 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 65 IPR014014 GO:0003724(InterPro)
HCH6g0399 410 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 68 238 IPR014001 -
HCH6g0399 410 CDD DEADc_EIF4AIII_DDX48 39 239 - -
HCH6g0399 410 FunFam Eukaryotic initiation factor 4A-III 21 241 - -
HCH6g0399 410 FunFam Eukaryotic initiation factor 4A-III 244 410 - -
HCH6g0399 410 Gene3D - 27 245 IPR027417 -
HCH6g0399 410 Gene3D - 246 410 IPR027417 -
HCH6g0399 410 CDD SF2_C_DEAD 250 380 - -
HCH6g0399 410 Pfam DEAD/DEAH box helicase 62 225 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH11g0353 HCH-Chr11:3339820 HCH6g0399 HCH-Chr6:7813549 3.90E-54 dispersed
HCH4g1493 HCH-Chr4:11299365 HCH6g0399 HCH-Chr6:7813549 2.30E-142 dispersed
HCH6g0093 HCH-Chr6:1173756 HCH6g0399 HCH-Chr6:7813549 6.50E-142 dispersed
HCH6g0399 HCH-Chr6:7813549 HCH9g0887 HCH-Chr9:6358946 3.10E-184 dispersed
HCH6g0399 HCH-Chr6:7813549 HCH4g0524 HCH-Chr4:3434713 2.70E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0399 K13025 - csv:101222664 788.104