Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0400 | ATGTCTCGCCAATTACCGTCGACTGCGTTCCATAAGTCCAAGACGCTTGACAATAAATACATGCTGGGAGATGAGATTGGAAAAGGAGCATATGGGCGAGTTTATAAAGGTCTGGATTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAGGAGGATCTCAACACGATCATGCAAGAGATTGACTTACTGAAGAATTTGAACCACAAAAACATTGTGAAGTATCTCGGATCTCTAAAAACAAAGACTCACCTTCACATAATACTTGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCAAACAAGTTTGGACCTTTTCCAGAATCATTGGTTGCTGTTTATATTTCTCAGGTTTTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTAATTCATCGAGATATTAAGGGTGCAAACATTCTGACCACTAAAGAGGGTCTTGTGAAACTTGCTGATTTCGGTGTTGCAACAAAATTAACTGAAGCTGATGTCAATACACATTCAGTTGTAGGAACACCTTACTGGATGGCTCCTGAGGTGATTGAAATGTCAGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACTGTGATTGAACTTCTTACATGCGTACCTCCTTATTATGATCTACAGCCTATGCCTGCGCTTTTTCGCATTGTACAGGACAAGCATCCTCCAATTCCTGATAGCCTATCACCAGACATTACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAAAACTGTCGACGGGCTTTGCAGTCTTCTCTTCGTCATAGTGGCACATTAAGAAACATTCAGGAAGATGCATCAACAGAACCAGAAATTACTAATGGAGATAACCAGAACTCTTCTGAAAGCCCTTTGGCCGAGAAAGATGAAGTAGCTGATTCTGATTTTAAAACTGATTCCAGGAAGGAATTATCATCAGATGTTACTACTGATACAAGCAAGTCCGAGAACAAATTTGTCTCAGGTTCTAATTTTGTTGAGGAAGGAGAAAGCCTAGAAGATGATACCCTATTGGAACAAGTTCCCACCTTATCCATCCATGAAAATTTAACTCTTCTAACTGGTTCCGGCAGACTTGCTACCTCTGGGACAGCCGAGTTTCATGAATCACATCGTAGAGTCCATGATGAAGTGGTAATGAATGGTGAAGTGTCATCTCCAGAATTAGGAAAAGATGTTTCTAGGAAACATGGAGAGAAAGAAAGTTCTACATTATCTGGTTCTAGATCATTTGGTTTTGTGACTGAAAGTCAAGATAATAGTGTTCAAAAGGCTTCAAAGATTTCGATTGCTTTGGGAGGAAATGAGCTGAGCAAATTTAGTGATACTCCGGGTGATGCATCCTTGGATGACTTATTCCAACCTTTGGATAAGCTACCTGGGGATCAAGCTGCTCAAGCATCATCTTCTGTGTCTATCCAGCATTCAAACTTAGGCAATATGCCAGTAAATGAGCCTGGGAGAAACGACCTGGCCACAAAATTGAGGGCTACAATTGCTCAGAAACAAATGGAAAATGAAATGGGACGAGCAAATGGTGGTGGTGACCTGCTGCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGACGAAAAGCTGCCAGGAGAAAACCTGTTCCCTCTGCAGGCTGTTGAGTTCAGCAGACTAGTTGGGTCATTGAGACCTGATGAGCCTGAAGATGTGATTGTATCTTCCTGTCAAAAACTGATCGCTATCTTTCATCAAAGACCTGAGCAGAAAATTGTTTATGTTACACAGCACGGTCTGCTTCCTTTAACAGAGTTACTTGAAGTTCCTAAAACTCGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAGATAGTAAAGGATAATGGTGATTTCCAAGAAAATGCCTGTCTTGTTGGTCTAATTCCTTCGGTAATGGGCTTTGCGGTTCCTGATCGTCCCCGAGAAGTTCGTATGGAAGCAGCAAATTTCTTGCAGCAGCTTTGTCAATCAAGCTCCTTGACATTGCAAATGTTCGTTGCATGCCGTGGAATACCTGTGCTAGTAGGCTTTCTGGAGGCTGATTATGCAAAGTACAGGGAAATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTCAAGCTCCAGCGTTCAACACCTAGAAATGATTTTTGTCGTATAGCTGCAAAAAATGGGATACTGCTTAGGCTAATTAACACCCTCTATAGCTTGAACGAAGCAACTCGGTTAGCTGCCATAACTGTTGGGGGTGGATTTTCGACTGATGGCTTGACTCAACGGCCGCGATCAGGTCAACTTGATTCTAGCCACCCTGTATTCACTCAGTGTGAGGCTTCATTTGCTGCACCTGATCAGCCTGATCTTTCGAAGGTCAGGCATGGAATAGTTGATCATCACTTGTCAACTGGAACGCCAGAACCTTCTCGGGCTTCAACTTCACATTCCCAAAGATCAGATGCCACTCAATCAGATCATCGACACTTTTCCACAGATGCTGATAGACCTCGATCCAGCAATGCCACAAGTGAAGCCTTGGGATCCTCTAAATTGCCAGAGCTAACATCTTCAGAAAAAGTTGCAAATTCATCAACCAAGGAACCATCTACTGGTGCTTCTAAAGAATATGAAAGTGTAGATAGATGGAAAACCGATGCTTCTAGGATCATCAATTCTGCTAACAGGATTTCCACAGATAGATCTCCAAAATTGGTGGAACCTGCATCTAATGGGTTTCCTTCTGCACTAGCTACCCAGCAAGAGCAAGTCCGACCCCTTCTAAGTCTGTTGGACAAAGAACCCCCTTCTCGACACTATTCTGGTCAGCTTGAGTACATGCGCCACCTCTCTGGATTGGAGAGACACGAAACTATAATGCCTCTATTGCATGCATCTAATGAAAAGAAGATAAATGGCGAGCCTGATTTTTTAATGGCAGAATTTGCAGATATTTCTCAACGTGGAAAAGACAATGGAAATTTTGACTCCACTGCTAAGGTTCCCCTTAAAACAGTGACAAAGAAGATAGGACCCCCAATGCCTAACGAGGGAGCCGCATCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTTCTTTCAGGTTCGGGTGTTTTAAATGCTAGACCAGGGAGTGCAACCTCCTCTGGGCTTCTTTCGCACATGGTTTCGACATTGAATGCAGATGTTGCGAGGGAATATCTGGCAAAGGTGGCAGATCTTCTGCTTGAGTTTGCCCAGGCAGATACAACCGTGAAGTCGTATATGTGCAGCCAAAGTTTGCTTAGTCGTCTTTTCCAGATGTTCAATAGGGTAGAGCCTCCAATTCTTTTGAAGATATTGAAGTGTATAAATCATCTGTCAACAGATCCAAACTGCCTAGAAAATCTTCAGCGCGCAGATGCAATTAAATATTTGATCCCAAACCTTGAACTTAAAGAAGGGTCTCTTGTATCTCAAATACATACTGAGGTCCTCAGTGCACTATTCAACTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATAATTCCGCACTTGATGCATTTTATTATATCAGACTCTCCTTTGAAGCAATATGCGTTACCTCTATTGTGTGACATGGCCCATGCATCACGTAATTCTAGGGAGCAGTTAAGAGCCCACGGTGGATTGGATGTGTACTTGAGCCTACTTGAGGATGAGCTTTGGTCTGTCACAGCATTAGATTCTATTGCTGTTTGCTTGGCTCATGACAACGACAACCGAAAAGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAAAAATTGGTGAAGTTTTTCCAGTGTTGTCCTGAACAACATTTTGTACATATATTGGAGCCTTTCTTGAAAATAATCACAAAATCTTCCCGAATTAATACAACATTAGCTGTTAATGGTTTGACACCATTGCTTATTGCAAGGCTGGATCATCAGGATGCTATCGCTCGGCTTAATCTGCTCAAACTGATAAAGGCTGTATATGAACATCACCCACGGCCAAAGCAATTGATTGTGGAGAATGATTTACCACACAAACTTCAAAATCTAATAGAGGAACGCAGAGACGGACAACGCTCTGGTGGCCAAGTGTTGGTGAAACAAATGGCTACATCACTGCTTAAAGCTCTTCATATAAATACTGTTTTGTAA | 4278 | 42.12 | MSRQLPSTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNTIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALQSSLRHSGTLRNIQEDASTEPEITNGDNQNSSESPLAEKDEVADSDFKTDSRKELSSDVTTDTSKSENKFVSGSNFVEEGESLEDDTLLEQVPTLSIHENLTLLTGSGRLATSGTAEFHESHRRVHDEVVMNGEVSSPELGKDVSRKHGEKESSTLSGSRSFGFVTESQDNSVQKASKISIALGGNELSKFSDTPGDASLDDLFQPLDKLPGDQAAQASSSVSIQHSNLGNMPVNEPGRNDLATKLRATIAQKQMENEMGRANGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLFPLQAVEFSRLVGSLRPDEPEDVIVSSCQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRVICSVLQLINQIVKDNGDFQENACLVGLIPSVMGFAVPDRPREVRMEAANFLQQLCQSSSLTLQMFVACRGIPVLVGFLEADYAKYREMVHLAIDGMWQIFKLQRSTPRNDFCRIAAKNGILLRLINTLYSLNEATRLAAITVGGGFSTDGLTQRPRSGQLDSSHPVFTQCEASFAAPDQPDLSKVRHGIVDHHLSTGTPEPSRASTSHSQRSDATQSDHRHFSTDADRPRSSNATSEALGSSKLPELTSSEKVANSSTKEPSTGASKEYESVDRWKTDASRIINSANRISTDRSPKLVEPASNGFPSALATQQEQVRPLLSLLDKEPPSRHYSGQLEYMRHLSGLERHETIMPLLHASNEKKINGEPDFLMAEFADISQRGKDNGNFDSTAKVPLKTVTKKIGPPMPNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL | 1425 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7819020 | 7869940 | - | evm.model.ptg000003l.1392 | HCH6g0400 | 545894 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 835 | 915 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 495 | 515 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 318 | 341 | - | - | |
HCH6g0400 | 1425 | SUPERFAMILY | ARM repeat | 1086 | 1399 | IPR016024 | - | |
HCH6g0400 | 1425 | Gene3D | Transferase(Phosphotransferase) domain 1 | 17 | 315 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 871 | 908 | - | - | |
HCH6g0400 | 1425 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 140 | 152 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | SMART | serkin_6 | 20 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 856 | 870 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 342 | 356 | - | - | |
HCH6g0400 | 1425 | FunFam | MAP3K epsilon protein kinase 1 | 578 | 786 | - | - | |
HCH6g0400 | 1425 | SUPERFAMILY | ARM repeat | 587 | 784 | IPR016024 | - | |
HCH6g0400 | 1425 | Gene3D | - | 1077 | 1420 | IPR011989 | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 841 | 855 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 421 | 435 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 296 | 317 | - | - | |
HCH6g0400 | 1425 | Gene3D | - | 577 | 787 | IPR011989 | - | |
HCH6g0400 | 1425 | ProSiteProfiles | Protein kinase domain profile. | 20 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | PANTHER | ARMADILLO REPEAT-CONTAINING PROTEIN 3 | 313 | 1425 | IPR052441 | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 296 | 364 | - | - | |
HCH6g0400 | 1425 | ProSitePatterns | Protein kinases ATP-binding region signature. | 26 | 49 | IPR017441 | GO:0005524(InterPro) | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 414 | 450 | - | - | |
HCH6g0400 | 1425 | SMART | arm_5 | 1159 | 1203 | IPR000225 | GO:0005515(InterPro) | |
HCH6g0400 | 1425 | SMART | arm_5 | 1205 | 1244 | IPR000225 | GO:0005515(InterPro) | |
HCH6g0400 | 1425 | SMART | arm_5 | 701 | 744 | IPR000225 | GO:0005515(InterPro) | |
HCH6g0400 | 1425 | SMART | arm_5 | 616 | 656 | IPR000225 | GO:0005515(InterPro) | |
HCH6g0400 | 1425 | Pfam | Protein kinase domain | 20 | 274 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | FunFam | MAP3K epsilon protein kinase 1-like | 1074 | 1420 | - | - | |
HCH6g0400 | 1425 | PRINTS | Tyrosine kinase catalytic domain signature | 96 | 109 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | PRINTS | Tyrosine kinase catalytic domain signature | 200 | 222 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | PRINTS | Tyrosine kinase catalytic domain signature | 134 | 152 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | PRINTS | Tyrosine kinase catalytic domain signature | 243 | 265 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0400 | 1425 | CDD | STKc_Cdc7_like | 19 | 274 | - | - | |
HCH6g0400 | 1425 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 275 | IPR011009 | - | |
HCH6g0400 | 1425 | FunFam | MAP3K epsilon protein kinase 1 | 17 | 306 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 436 | 450 | - | - | |
HCH6g0400 | 1425 | MobiDBLite | consensus disorder prediction | 481 | 520 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH4g1000 | HCH-Chr4:6437507 | HCH6g0400 | HCH-Chr6:7819020 | 4.20E-15 | dispersed | |
HCH6g0400 | HCH-Chr6:7819020 | HCH7g0439 | HCH-Chr7:3248409 | 4.30E-31 | dispersed | |
HCH6g0400 | HCH-Chr6:7819020 | HCH6g1609 | HCH-Chr6:49234639 | 1.10E-63 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81557 | PF00069 | Pkinase | 4.30E-73 | CL0016 | HCH | PK |
Pathway information
