Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0400 ATGTCTCGCCAATTACCGTCGACTGCGTTCCATAAGTCCAAGACGCTTGACAATAAATACATGCTGGGAGATGAGATTGGAAAAGGAGCATATGGGCGAGTTTATAAAGGTCTGGATTTGGAGAATGGGGACTTTGTTGCTATTAAACAAGTTTCCTTGGAGAATATTGCTCAGGAGGATCTCAACACGATCATGCAAGAGATTGACTTACTGAAGAATTTGAACCACAAAAACATTGTGAAGTATCTCGGATCTCTAAAAACAAAGACTCACCTTCACATAATACTTGAGTATGTGGAGAATGGATCACTTGCCAACATTATCAAGCCAAACAAGTTTGGACCTTTTCCAGAATCATTGGTTGCTGTTTATATTTCTCAGGTTTTGGAAGGCTTGGTTTATCTACATGAGCAGGGTGTAATTCATCGAGATATTAAGGGTGCAAACATTCTGACCACTAAAGAGGGTCTTGTGAAACTTGCTGATTTCGGTGTTGCAACAAAATTAACTGAAGCTGATGTCAATACACATTCAGTTGTAGGAACACCTTACTGGATGGCTCCTGAGGTGATTGAAATGTCAGGGGTTTGTGCAGCTTCTGACATTTGGAGTGTTGGCTGTACTGTGATTGAACTTCTTACATGCGTACCTCCTTATTATGATCTACAGCCTATGCCTGCGCTTTTTCGCATTGTACAGGACAAGCATCCTCCAATTCCTGATAGCCTATCACCAGACATTACTGATTTTTTACGCCAGTGCTTTAAGAAGGATGCTAGGCAAAGGCCTGATGCAAAAACTTTGCTTTCTCATCCTTGGATACAAAACTGTCGACGGGCTTTGCAGTCTTCTCTTCGTCATAGTGGCACATTAAGAAACATTCAGGAAGATGCATCAACAGAACCAGAAATTACTAATGGAGATAACCAGAACTCTTCTGAAAGCCCTTTGGCCGAGAAAGATGAAGTAGCTGATTCTGATTTTAAAACTGATTCCAGGAAGGAATTATCATCAGATGTTACTACTGATACAAGCAAGTCCGAGAACAAATTTGTCTCAGGTTCTAATTTTGTTGAGGAAGGAGAAAGCCTAGAAGATGATACCCTATTGGAACAAGTTCCCACCTTATCCATCCATGAAAATTTAACTCTTCTAACTGGTTCCGGCAGACTTGCTACCTCTGGGACAGCCGAGTTTCATGAATCACATCGTAGAGTCCATGATGAAGTGGTAATGAATGGTGAAGTGTCATCTCCAGAATTAGGAAAAGATGTTTCTAGGAAACATGGAGAGAAAGAAAGTTCTACATTATCTGGTTCTAGATCATTTGGTTTTGTGACTGAAAGTCAAGATAATAGTGTTCAAAAGGCTTCAAAGATTTCGATTGCTTTGGGAGGAAATGAGCTGAGCAAATTTAGTGATACTCCGGGTGATGCATCCTTGGATGACTTATTCCAACCTTTGGATAAGCTACCTGGGGATCAAGCTGCTCAAGCATCATCTTCTGTGTCTATCCAGCATTCAAACTTAGGCAATATGCCAGTAAATGAGCCTGGGAGAAACGACCTGGCCACAAAATTGAGGGCTACAATTGCTCAGAAACAAATGGAAAATGAAATGGGACGAGCAAATGGTGGTGGTGACCTGCTGCGACTAGTGATGGGTGTTTTAAAGGATGATGATATTGATATTGATGGTTTGGTTTTTGACGAAAAGCTGCCAGGAGAAAACCTGTTCCCTCTGCAGGCTGTTGAGTTCAGCAGACTAGTTGGGTCATTGAGACCTGATGAGCCTGAAGATGTGATTGTATCTTCCTGTCAAAAACTGATCGCTATCTTTCATCAAAGACCTGAGCAGAAAATTGTTTATGTTACACAGCACGGTCTGCTTCCTTTAACAGAGTTACTTGAAGTTCCTAAAACTCGTGTTATATGTTCTGTGCTTCAGCTTATAAATCAGATAGTAAAGGATAATGGTGATTTCCAAGAAAATGCCTGTCTTGTTGGTCTAATTCCTTCGGTAATGGGCTTTGCGGTTCCTGATCGTCCCCGAGAAGTTCGTATGGAAGCAGCAAATTTCTTGCAGCAGCTTTGTCAATCAAGCTCCTTGACATTGCAAATGTTCGTTGCATGCCGTGGAATACCTGTGCTAGTAGGCTTTCTGGAGGCTGATTATGCAAAGTACAGGGAAATGGTTCACCTAGCTATTGATGGAATGTGGCAGATCTTCAAGCTCCAGCGTTCAACACCTAGAAATGATTTTTGTCGTATAGCTGCAAAAAATGGGATACTGCTTAGGCTAATTAACACCCTCTATAGCTTGAACGAAGCAACTCGGTTAGCTGCCATAACTGTTGGGGGTGGATTTTCGACTGATGGCTTGACTCAACGGCCGCGATCAGGTCAACTTGATTCTAGCCACCCTGTATTCACTCAGTGTGAGGCTTCATTTGCTGCACCTGATCAGCCTGATCTTTCGAAGGTCAGGCATGGAATAGTTGATCATCACTTGTCAACTGGAACGCCAGAACCTTCTCGGGCTTCAACTTCACATTCCCAAAGATCAGATGCCACTCAATCAGATCATCGACACTTTTCCACAGATGCTGATAGACCTCGATCCAGCAATGCCACAAGTGAAGCCTTGGGATCCTCTAAATTGCCAGAGCTAACATCTTCAGAAAAAGTTGCAAATTCATCAACCAAGGAACCATCTACTGGTGCTTCTAAAGAATATGAAAGTGTAGATAGATGGAAAACCGATGCTTCTAGGATCATCAATTCTGCTAACAGGATTTCCACAGATAGATCTCCAAAATTGGTGGAACCTGCATCTAATGGGTTTCCTTCTGCACTAGCTACCCAGCAAGAGCAAGTCCGACCCCTTCTAAGTCTGTTGGACAAAGAACCCCCTTCTCGACACTATTCTGGTCAGCTTGAGTACATGCGCCACCTCTCTGGATTGGAGAGACACGAAACTATAATGCCTCTATTGCATGCATCTAATGAAAAGAAGATAAATGGCGAGCCTGATTTTTTAATGGCAGAATTTGCAGATATTTCTCAACGTGGAAAAGACAATGGAAATTTTGACTCCACTGCTAAGGTTCCCCTTAAAACAGTGACAAAGAAGATAGGACCCCCAATGCCTAACGAGGGAGCCGCATCCACATCTGGAATTGCTTCACAGACAGCATCTGGGGTTCTTTCAGGTTCGGGTGTTTTAAATGCTAGACCAGGGAGTGCAACCTCCTCTGGGCTTCTTTCGCACATGGTTTCGACATTGAATGCAGATGTTGCGAGGGAATATCTGGCAAAGGTGGCAGATCTTCTGCTTGAGTTTGCCCAGGCAGATACAACCGTGAAGTCGTATATGTGCAGCCAAAGTTTGCTTAGTCGTCTTTTCCAGATGTTCAATAGGGTAGAGCCTCCAATTCTTTTGAAGATATTGAAGTGTATAAATCATCTGTCAACAGATCCAAACTGCCTAGAAAATCTTCAGCGCGCAGATGCAATTAAATATTTGATCCCAAACCTTGAACTTAAAGAAGGGTCTCTTGTATCTCAAATACATACTGAGGTCCTCAGTGCACTATTCAACTTGTGCAAGATAAATAAGAGGAGACAAGAATATGCAGCTGAAAATGGAATAATTCCGCACTTGATGCATTTTATTATATCAGACTCTCCTTTGAAGCAATATGCGTTACCTCTATTGTGTGACATGGCCCATGCATCACGTAATTCTAGGGAGCAGTTAAGAGCCCACGGTGGATTGGATGTGTACTTGAGCCTACTTGAGGATGAGCTTTGGTCTGTCACAGCATTAGATTCTATTGCTGTTTGCTTGGCTCATGACAACGACAACCGAAAAGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAAAAATTGGTGAAGTTTTTCCAGTGTTGTCCTGAACAACATTTTGTACATATATTGGAGCCTTTCTTGAAAATAATCACAAAATCTTCCCGAATTAATACAACATTAGCTGTTAATGGTTTGACACCATTGCTTATTGCAAGGCTGGATCATCAGGATGCTATCGCTCGGCTTAATCTGCTCAAACTGATAAAGGCTGTATATGAACATCACCCACGGCCAAAGCAATTGATTGTGGAGAATGATTTACCACACAAACTTCAAAATCTAATAGAGGAACGCAGAGACGGACAACGCTCTGGTGGCCAAGTGTTGGTGAAACAAATGGCTACATCACTGCTTAAAGCTCTTCATATAAATACTGTTTTGTAA 4278 42.12 MSRQLPSTAFHKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNTIMQEIDLLKNLNHKNIVKYLGSLKTKTHLHIILEYVENGSLANIIKPNKFGPFPESLVAVYISQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDKHPPIPDSLSPDITDFLRQCFKKDARQRPDAKTLLSHPWIQNCRRALQSSLRHSGTLRNIQEDASTEPEITNGDNQNSSESPLAEKDEVADSDFKTDSRKELSSDVTTDTSKSENKFVSGSNFVEEGESLEDDTLLEQVPTLSIHENLTLLTGSGRLATSGTAEFHESHRRVHDEVVMNGEVSSPELGKDVSRKHGEKESSTLSGSRSFGFVTESQDNSVQKASKISIALGGNELSKFSDTPGDASLDDLFQPLDKLPGDQAAQASSSVSIQHSNLGNMPVNEPGRNDLATKLRATIAQKQMENEMGRANGGGDLLRLVMGVLKDDDIDIDGLVFDEKLPGENLFPLQAVEFSRLVGSLRPDEPEDVIVSSCQKLIAIFHQRPEQKIVYVTQHGLLPLTELLEVPKTRVICSVLQLINQIVKDNGDFQENACLVGLIPSVMGFAVPDRPREVRMEAANFLQQLCQSSSLTLQMFVACRGIPVLVGFLEADYAKYREMVHLAIDGMWQIFKLQRSTPRNDFCRIAAKNGILLRLINTLYSLNEATRLAAITVGGGFSTDGLTQRPRSGQLDSSHPVFTQCEASFAAPDQPDLSKVRHGIVDHHLSTGTPEPSRASTSHSQRSDATQSDHRHFSTDADRPRSSNATSEALGSSKLPELTSSEKVANSSTKEPSTGASKEYESVDRWKTDASRIINSANRISTDRSPKLVEPASNGFPSALATQQEQVRPLLSLLDKEPPSRHYSGQLEYMRHLSGLERHETIMPLLHASNEKKINGEPDFLMAEFADISQRGKDNGNFDSTAKVPLKTVTKKIGPPMPNEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSTLNADVAREYLAKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRADAIKYLIPNLELKEGSLVSQIHTEVLSALFNLCKINKRRQEYAAENGIIPHLMHFIISDSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLSLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQHFVHILEPFLKIITKSSRINTTLAVNGLTPLLIARLDHQDAIARLNLLKLIKAVYEHHPRPKQLIVENDLPHKLQNLIEERRDGQRSGGQVLVKQMATSLLKALHINTVL 1425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7819020 7869940 - evm.model.ptg000003l.1392 HCH6g0400 545894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0400 1425 MobiDBLite consensus disorder prediction 835 915 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 495 515 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 318 341 - -
HCH6g0400 1425 SUPERFAMILY ARM repeat 1086 1399 IPR016024 -
HCH6g0400 1425 Gene3D Transferase(Phosphotransferase) domain 1 17 315 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 871 908 - -
HCH6g0400 1425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 SMART serkin_6 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 MobiDBLite consensus disorder prediction 856 870 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 342 356 - -
HCH6g0400 1425 FunFam MAP3K epsilon protein kinase 1 578 786 - -
HCH6g0400 1425 SUPERFAMILY ARM repeat 587 784 IPR016024 -
HCH6g0400 1425 Gene3D - 1077 1420 IPR011989 -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 841 855 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 421 435 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 296 317 - -
HCH6g0400 1425 Gene3D - 577 787 IPR011989 -
HCH6g0400 1425 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 PANTHER ARMADILLO REPEAT-CONTAINING PROTEIN 3 313 1425 IPR052441 -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 296 364 - -
HCH6g0400 1425 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524(InterPro)
HCH6g0400 1425 MobiDBLite consensus disorder prediction 414 450 - -
HCH6g0400 1425 SMART arm_5 1159 1203 IPR000225 GO:0005515(InterPro)
HCH6g0400 1425 SMART arm_5 1205 1244 IPR000225 GO:0005515(InterPro)
HCH6g0400 1425 SMART arm_5 701 744 IPR000225 GO:0005515(InterPro)
HCH6g0400 1425 SMART arm_5 616 656 IPR000225 GO:0005515(InterPro)
HCH6g0400 1425 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 FunFam MAP3K epsilon protein kinase 1-like 1074 1420 - -
HCH6g0400 1425 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0400 1425 CDD STKc_Cdc7_like 19 274 - -
HCH6g0400 1425 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
HCH6g0400 1425 FunFam MAP3K epsilon protein kinase 1 17 306 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 436 450 - -
HCH6g0400 1425 MobiDBLite consensus disorder prediction 481 520 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH4g1000 HCH-Chr4:6437507 HCH6g0400 HCH-Chr6:7819020 4.20E-15 dispersed
HCH6g0400 HCH-Chr6:7819020 HCH7g0439 HCH-Chr7:3248409 4.30E-31 dispersed
HCH6g0400 HCH-Chr6:7819020 HCH6g1609 HCH-Chr6:49234639 1.10E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81557 PF00069 Pkinase 4.30E-73 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0400 - - - 0.0