Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0404 ATGGGCTGCTTTAGCTGCTGTCAAGAAGATGAAATTCAGAAAGCAGGTGATAATGGACGCACGTATGCTACAAAAAATACGACAGGAAACAATGGAGGTTATCATAAACCTGAGACTGCACCAATGGTCACTCAAGCTGTCAAATTACAACCTATTTTAGTGCCTACAATATCTGTAGATGAACTAGCAGAAGTAACTGGAGACTTTGGGACTGAAGCTCTTATTGGAGAGGGTTCATATGGGAGAGTATACTACGGGATGCTTAAAAGCGGGCAGCCCGCTGCAATCAAGAAGTTAGATGCCAGCAAACAACCCGATGATGAATTTTTAGCACAGGTTTCTATGGTCTCAAGGCTGAAGCATGAAAATTTTGTTCAATTGCTTGGTTATTGCATTGATGGGAGTTCCCGTATTCTTGCCTATGAGTTTGCATCTAACGGATCTCTTCATGATATTCTTCACGGAAGGAAAGGAGTGAAAGGTGCTCAGCCTGGTCCCGTTCTGTCATGGGCACAACGTGTGAAAATTGCTGTAAGTGCTGCTAGAGGGCTCGAGTATTTGCATGAAAAGGCCGATCCCCACATTATCCATCGTGATATCAAGTCCAGCAATGTACTAATATATGATGATGATGTTGCAAAAATTGCTGACTTTGATTTGTCGAATCAAGCTCCTGATATGGCCGCACGCCTTCATTCTACCCGTGTCCTTGGAACTTTTGGTTACCATGCTCCTGAATATGCCATGACTGGTCAATTGAATGCCAAGAGTGATGTATACAGCTTTGGTGTCGTCTTGCTTGAACTTCTGACAGGGAGAAAACCTGTAGATCATACACTACCCCGAGGACAACAAAGTCTAGTAACCTGGGCTACACCGAAGCTGAGTGAAGATAAAGTTAGGCAGTGTGTTGATGCAAGACTTGGCGGAGAGTACCCCCCAAAGGCAGTTGCAAAGTTGGCAGCTGTTGCGGCCTTGTGCGTTCAATACGAGGCAGATTTCCGGCCAAACATGAGCATTGTTGTCAAAGCCCTCCAGCATTTATTAAATCGACCTGGACCTGCTGGTGATGCACCAAACCCGTAA 1086 44.94 MGCFSCCQEDEIQKAGDNGRTYATKNTTGNNGGYHKPETAPMVTQAVKLQPILVPTISVDELAEVTGDFGTEALIGEGSYGRVYYGMLKSGQPAAIKKLDASKQPDDEFLAQVSMVSRLKHENFVQLLGYCIDGSSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLSWAQRVKIAVSAARGLEYLHEKADPHIIHRDIKSSNVLIYDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDARLGGEYPPKAVAKLAAVAALCVQYEADFRPNMSIVVKALQHLLNRPGPAGDAPNP 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8033994 8038367 - evm.model.ptg000003l.1388 HCH6g0404 545898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0404 361 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
HCH6g0404 361 Gene3D Transferase(Phosphotransferase) domain 1 144 353 - -
HCH6g0404 361 SUPERFAMILY Protein kinase-like (PK-like) 50 345 IPR011009 -
HCH6g0404 361 ProSiteProfiles Protein kinase domain profile. 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0404 361 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 3 351 IPR052101 -
HCH6g0404 361 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0404 361 FunFam pto-interacting protein 1 145 355 - -
HCH6g0404 361 Gene3D Phosphorylase Kinase; domain 1 34 143 - -
HCH6g0404 361 SMART serkin_6 69 349 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0404 361 Pfam Protein tyrosine and serine/threonine kinase 73 345 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0404 361 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0404 HCH-Chr6:8033994 HCH6g0442 HCH-Chr6:12270439 3.10E-74 dispersed
HCH10g0029 HCH-Chr10:256036 HCH6g0404 HCH-Chr6:8033994 1.30E-137 transposed
HCH11g0549 HCH-Chr11:7519064 HCH6g0404 HCH-Chr6:8033994 5.90E-134 transposed
HCH5g1270 HCH-Chr5:46748286 HCH6g0404 HCH-Chr6:8033994 3.60E-140 transposed
HCH4g1125 HCH-Chr4:7337536 HCH6g0404 HCH-Chr6:8033994 2.00E-171 wgd
HCH6g0404 HCH-Chr6:8033994 HCH7g0995 HCH-Chr7:40803401 8.40E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81558 PF07714 PK_Tyr_Ser-Thr 1.40E-46 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0404 K13436 - csv:101223136 650.973