Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0405 ATGGAGACTGGATTTGGAGGCCAAGCTTGTCAATTGTATGGTGTGGGTTCTATGGGTTTGAGGACTGTTGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTATTTATTGCTAGGTCGTTAAATACTGTCGAATCTGATCATTTGAGTAGGCAATTTTTCCCAATTGTGTCTGGGATTCCCTTGACTGGTGGAGGTTCCTCGAATAGTTCCTCCTCGTGTTCTGATGATGCTAATATGGTGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAAGAGGAGAATTACTGTGGTGGAAGACAATAATTTAAACGATGAAGCACGGACCTTGAGCTTAAAGGTAGGTGGACATGGCTCTCAGCTTACTGGGGAAGGAGGGAATTGTGAAGGAACTAGTGGGAAGAAGAGTAAATTGTCTGGGGGAAACTCGAATCGGGCGGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAGTGCGAAAGATTATCACAGACGACATAAAGTTTGTGAAATGCATTCCAAGGCCAGTAGGGCGCTTGTTGCGAATGTAATGCAGCGATTCTGTCAGCAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGGAGTTGTCGTAGGCGTTTGGCTGGCCACAACAAGCGCAGAAGAAAAACAAATGCAGATAATGTTGTTAATGGAAGTTCTCCAACTGATGAACAGACTAGCACTTATTCATTGATAACTCTATTACGAATACTTTCAAATCTGCACGGTGTAGCCAATGGTTCAAATCAGACCTCAGATCAGGATCTTCTTTCTCATCTTATAAGAAGCCTTGCCTGCCAAACTGGTGAACATGGGGGGAAAAACGCACCCGGGATTCTGCATGAACCCCAGAAATTGTTGAGCAATGGGGCATTGATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTTCTCAGCTTCCTCCGAGACCTTCTAAACAACAGGACTCAATACCAATATCTGAGACACCAGAACAGGCCATCAGTGTTCATGATCTTCGGGGTGGAGATACACCAGCCATATCTTGTATAAAACCAAGCACTATGAATAGCCCTCCAGCTTATTCAGAAATCAGGGATAGTACAATTGGGCAAAGCAAAATGATGAACTTCGATTTGAATGACGCTTATGTTGACTCGGATGATGGCATGGAAGACATTGAGAGACCAGCACTCCCTGTGCATTTGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACACGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGGATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACGGACCGCATCATTTTGAAATTGTTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCACACAGTCCTACTGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTATTCTAACAATTTATCTTCGCCAGACAGAGGCTGCATGGGAAGACCTTTGCTATGACCTCAGTACTAGTTTGAATAGGCTTCTGGAAGTTTCAGCCGATGCTTTTTGGAGAACTGGATGGGTTTATGTTAGAGTTCAGCACCAAATAGCTTTCATGGATCATGGTCAGATTGTAGTTGACACATCCTTACCTCTGAGAAATAAGAATTACTGTAGAATCTTGAGTGTAAAGCCTATTGCAGTTCCTGCATCTAAGAAGGCTATATTTTCAGTTAGAGGAACAAACCTGACAAGACCTACAACAAGGTTGCTTTGTGCAATAGAAGGAAATTATCTGACTCAGGAAGCTTCAAATGAGTCAACAGAAAGTGTTGATAACTTGAAGGCAGGCGCTATCCAATGCATTAGCTTTTCTTGTTCTATACCTGTCGTAATCGGAAGGGGATTCATTGAGGTGGAAGACTATGGTTTTAGCAGCAGCTTTTTCCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCAGAGATTTGTACTCTTGAGAGTAAATTAGAATTTTCTGATCCATGCTTGGATTTTGGGGACGATGCGGAAATGGAAGGAAGGAGTAATGAGATGGAGTTTATTCACGAAATTGGTTGGCTGCTTCACAGAAATCAACTGAAGTCTAGATTAGGTCACATGGATCCTAATGAAAATCTCTTTTCACTATCACGGTTCAAGTGGCTTATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTAGTAAAAAAGCTGTTAGATGTTCTTCTTAATGGGACTGTGGATCCAGGAGATTACACTTCCTTGAATCTTGCATTGACTGAGATGGGTCTTCTTCACCGAGCAGTAAGAAAAAACAGTAGGTCGCTGGTGGAGCTCCTTTTGAGATATCCTTTGAAAGTAATTGATACATCAAGTTCTGTAGACGATGCATCCGTTGATGAAGCAACTGGTAGCTTCCTGTTTAGACCTGATATCATAGGCCCAGCAGGTTTGACCCCTCTTCACATTGCGGCTGGTAAAGATGATTCTGAGGATGTACTTGATGCATTAACAAATGACCCTGGAATGGTGGGAGTTGAGGCATGGAAGACTGCTCGTGACAGCACAGGCTCCACACCTGAAGATTATGCTCGTCTGCGAGGCCACTACTCGTATATACGCCTTGTCCAAAGGAAAATTAACAGGAGATCTACAGGTGGTGGGCATGTGGTACTTGACATTCCTAGTACTCATTCAGATAGTAGCTGGAATCAGAAGCAGAATACAGATTTGACCTCCGGATTTGAGATTGGTCGGACAGAACTGAAATCTGTTCAGCCGCATTGCAGGGTTTGTGATAGGAAACCAATGCGTTGTAGAGTGTCGTCTGGTTCGTCTCTGGTTTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCCTCTGTTTGTGTGTGTGTTGCTCTCCTATTTAAAAGCTCACCTGAGGTTCTCTATGTCTTCCGTCCCTTCCGATGGGAATTAGTAGATTTCGGTACTACTTAG 3057 43.83 METGFGGQACQLYGVGSMGLRTVGKRSLEWDLNDWKWDGDLFIARSLNTVESDHLSRQFFPIVSGIPLTGGGSSNSSSSCSDDANMVGIEKGKREVEKKRRITVVEDNNLNDEARTLSLKVGGHGSQLTGEGGNCEGTSGKKSKLSGGNSNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKASRALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNADNVVNGSSPTDEQTSTYSLITLLRILSNLHGVANGSNQTSDQDLLSHLIRSLACQTGEHGGKNAPGILHEPQKLLSNGALIGKSDLVSTFLSNGSQLPPRPSKQQDSIPISETPEQAISVHDLRGGDTPAISCIKPSTMNSPPAYSEIRDSTIGQSKMMNFDLNDAYVDSDDGMEDIERPALPVHLGTSSLECPSWVQHDSHQSSPPQTSGNSDSGSAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVILTIYLRQTEAAWEDLCYDLSTSLNRLLEVSADAFWRTGWVYVRVQHQIAFMDHGQIVVDTSLPLRNKNYCRILSVKPIAVPASKKAIFSVRGTNLTRPTTRLLCAIEGNYLTQEASNESTESVDNLKAGAIQCISFSCSIPVVIGRGFIEVEDYGFSSSFFPFIVAEEDVCSEICTLESKLEFSDPCLDFGDDAEMEGRSNEMEFIHEIGWLLHRNQLKSRLGHMDPNENLFSLSRFKWLMEFSMDHDWCAVVKKLLDVLLNGTVDPGDYTSLNLALTEMGLLHRAVRKNSRSLVELLLRYPLKVIDTSSSVDDASVDEATGSFLFRPDIIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKTARDSTGSTPEDYARLRGHYSYIRLVQRKINRRSTGGGHVVLDIPSTHSDSSWNQKQNTDLTSGFEIGRTELKSVQPHCRVCDRKPMRCRVSSGSSLVYRPAMLSMVAIASVCVCVALLFKSSPEVLYVFRPFRWELVDFGTT 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8230185 8236610 + evm.model.ptg000003l.1387 HCH6g0405 545899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0405 1018 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH6g0405 1018 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH6g0405 1018 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
HCH6g0405 1018 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
HCH6g0405 1018 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 1013 IPR044817 GO:0003677(InterPro)
HCH6g0405 1018 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
HCH6g0405 1018 MobiDBLite consensus disorder prediction 131 148 - -
HCH6g0405 1018 MobiDBLite consensus disorder prediction 122 148 - -
HCH6g0405 1018 MobiDBLite consensus disorder prediction 427 460 - -
HCH6g0405 1018 MobiDBLite consensus disorder prediction 220 243 - -
HCH6g0405 1018 SUPERFAMILY Ankyrin repeat 786 900 IPR036770 -
HCH6g0405 1018 Gene3D - 760 910 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0018 HCH-Chr12:133799 HCH6g0405 HCH-Chr6:8230185 7.20E-114 dispersed
HCH12g1059 HCH-Chr12:7939992 HCH6g0405 HCH-Chr6:8230185 2.70E-29 dispersed
HCH6g0405 HCH-Chr6:8230185 HCH7g1139 HCH-Chr7:44205516 1.80E-39 dispersed
HCH6g0405 HCH-Chr6:8230185 HCH3g0131 HCH-Chr3:831086 1.30E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33693 PF03110 SBP 1.90E-29 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0405 - - - 0.0