Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0405 ATGGAGACTGGATTTGGAGGCCAAGCTTGTCAATTGTATGGTGTGGGTTCTATGGGTTTGAGGACTGTTGGGAAGAGGAGTTTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTATTTATTGCTAGGTCGTTAAATACTGTCGAATCTGATCATTTGAGTAGGCAATTTTTCCCAATTGTGTCTGGGATTCCCTTGACTGGTGGAGGTTCCTCGAATAGTTCCTCCTCGTGTTCTGATGATGCTAATATGGTGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAAGAGGAGAATTACTGTGGTGGAAGACAATAATTTAAACGATGAAGCACGGACCTTGAGCTTAAAGGTAGGTGGACATGGCTCTCAGCTTACTGGGGAAGGAGGGAATTGTGAAGGAACTAGTGGGAAGAAGAGTAAATTGTCTGGGGGAAACTCGAATCGGGCGGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAGTGCGAAAGATTATCACAGACGACATAAAGTTTGTGAAATGCATTCCAAGGCCAGTAGGGCGCTTGTTGCGAATGTAATGCAGCGATTCTGTCAGCAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAAGGGAAAAGGAGTTGTCGTAGGCGTTTGGCTGGCCACAACAAGCGCAGAAGAAAAACAAATGCAGATAATGTTGTTAATGGAAGTTCTCCAACTGATGAACAGACTAGCACTTATTCATTGATAACTCTATTACGAATACTTTCAAATCTGCACGGTGTAGCCAATGGTTCAAATCAGACCTCAGATCAGGATCTTCTTTCTCATCTTATAAGAAGCCTTGCCTGCCAAACTGGTGAACATGGGGGGAAAAACGCACCCGGGATTCTGCATGAACCCCAGAAATTGTTGAGCAATGGGGCATTGATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAACGGTTCTCAGCTTCCTCCGAGACCTTCTAAACAACAGGACTCAATACCAATATCTGAGACACCAGAACAGGCCATCAGTGTTCATGATCTTCGGGGTGGAGATACACCAGCCATATCTTGTATAAAACCAAGCACTATGAATAGCCCTCCAGCTTATTCAGAAATCAGGGATAGTACAATTGGGCAAAGCAAAATGATGAACTTCGATTTGAATGACGCTTATGTTGACTCGGATGATGGCATGGAAGACATTGAGAGACCAGCACTCCCTGTGCATTTGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACACGACTCTCATCAGTCAAGTCCCCCTCAAACTAGTGGAAATTCAGATTCAGGATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACGGACCGCATCATTTTGAAATTGTTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCACACAGTCCTACTGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTATTCTAACAATTTATCTTCGCCAGACAGAGGCTGCATGGGAAGACCTTTGCTATGACCTCAGTACTAGTTTGAATAGGCTTCTGGAAGTTTCAGCCGATGCTTTTTGGAGAACTGGATGGGTTTATGTTAGAGTTCAGCACCAAATAGCTTTCATGGATCATGGTCAGATTGTAGTTGACACATCCTTACCTCTGAGAAATAAGAATTACTGTAGAATCTTGAGTGTAAAGCCTATTGCAGTTCCTGCATCTAAGAAGGCTATATTTTCAGTTAGAGGAACAAACCTGACAAGACCTACAACAAGGTTGCTTTGTGCAATAGAAGGAAATTATCTGACTCAGGAAGCTTCAAATGAGTCAACAGAAAGTGTTGATAACTTGAAGGCAGGCGCTATCCAATGCATTAGCTTTTCTTGTTCTATACCTGTCGTAATCGGAAGGGGATTCATTGAGGTGGAAGACTATGGTTTTAGCAGCAGCTTTTTCCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCAGAGATTTGTACTCTTGAGAGTAAATTAGAATTTTCTGATCCATGCTTGGATTTTGGGGACGATGCGGAAATGGAAGGAAGGAGTAATGAGATGGAGTTTATTCACGAAATTGGTTGGCTGCTTCACAGAAATCAACTGAAGTCTAGATTAGGTCACATGGATCCTAATGAAAATCTCTTTTCACTATCACGGTTCAAGTGGCTTATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTAGTAAAAAAGCTGTTAGATGTTCTTCTTAATGGGACTGTGGATCCAGGAGATTACACTTCCTTGAATCTTGCATTGACTGAGATGGGTCTTCTTCACCGAGCAGTAAGAAAAAACAGTAGGTCGCTGGTGGAGCTCCTTTTGAGATATCCTTTGAAAGTAATTGATACATCAAGTTCTGTAGACGATGCATCCGTTGATGAAGCAACTGGTAGCTTCCTGTTTAGACCTGATATCATAGGCCCAGCAGGTTTGACCCCTCTTCACATTGCGGCTGGTAAAGATGATTCTGAGGATGTACTTGATGCATTAACAAATGACCCTGGAATGGTGGGAGTTGAGGCATGGAAGACTGCTCGTGACAGCACAGGCTCCACACCTGAAGATTATGCTCGTCTGCGAGGCCACTACTCGTATATACGCCTTGTCCAAAGGAAAATTAACAGGAGATCTACAGGTGGTGGGCATGTGGTACTTGACATTCCTAGTACTCATTCAGATAGTAGCTGGAATCAGAAGCAGAATACAGATTTGACCTCCGGATTTGAGATTGGTCGGACAGAACTGAAATCTGTTCAGCCGCATTGCAGGGTTTGTGATAGGAAACCAATGCGTTGTAGAGTGTCGTCTGGTTCGTCTCTGGTTTACAGGCCTGCAATGCTTTCAATGGTGGCCATTGCCTCTGTTTGTGTGTGTGTTGCTCTCCTATTTAAAAGCTCACCTGAGGTTCTCTATGTCTTCCGTCCCTTCCGATGGGAATTAGTAGATTTCGGTACTACTTAG 3057 43.83 METGFGGQACQLYGVGSMGLRTVGKRSLEWDLNDWKWDGDLFIARSLNTVESDHLSRQFFPIVSGIPLTGGGSSNSSSSCSDDANMVGIEKGKREVEKKRRITVVEDNNLNDEARTLSLKVGGHGSQLTGEGGNCEGTSGKKSKLSGGNSNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKASRALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNADNVVNGSSPTDEQTSTYSLITLLRILSNLHGVANGSNQTSDQDLLSHLIRSLACQTGEHGGKNAPGILHEPQKLLSNGALIGKSDLVSTFLSNGSQLPPRPSKQQDSIPISETPEQAISVHDLRGGDTPAISCIKPSTMNSPPAYSEIRDSTIGQSKMMNFDLNDAYVDSDDGMEDIERPALPVHLGTSSLECPSWVQHDSHQSSPPQTSGNSDSGSAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVILTIYLRQTEAAWEDLCYDLSTSLNRLLEVSADAFWRTGWVYVRVQHQIAFMDHGQIVVDTSLPLRNKNYCRILSVKPIAVPASKKAIFSVRGTNLTRPTTRLLCAIEGNYLTQEASNESTESVDNLKAGAIQCISFSCSIPVVIGRGFIEVEDYGFSSSFFPFIVAEEDVCSEICTLESKLEFSDPCLDFGDDAEMEGRSNEMEFIHEIGWLLHRNQLKSRLGHMDPNENLFSLSRFKWLMEFSMDHDWCAVVKKLLDVLLNGTVDPGDYTSLNLALTEMGLLHRAVRKNSRSLVELLLRYPLKVIDTSSSVDDASVDEATGSFLFRPDIIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKTARDSTGSTPEDYARLRGHYSYIRLVQRKINRRSTGGGHVVLDIPSTHSDSSWNQKQNTDLTSGFEIGRTELKSVQPHCRVCDRKPMRCRVSSGSSLVYRPAMLSMVAIASVCVCVALLFKSSPEVLYVFRPFRWELVDFGTT 1018
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8230185 8236610 + evm.model.ptg000003l.1387 HCH6g0405 545899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0405 1018 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH6g0405 1018 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH6g0405 1018 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
HCH6g0405 1018 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
HCH6g0405 1018 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 33 1013 IPR044817 GO:0003677(InterPro)
HCH6g0405 1018 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
HCH6g0405 1018 MobiDBLite consensus disorder prediction 131 148 - -
HCH6g0405 1018 MobiDBLite consensus disorder prediction 122 148 - -
HCH6g0405 1018 MobiDBLite consensus disorder prediction 427 460 - -
HCH6g0405 1018 MobiDBLite consensus disorder prediction 220 243 - -
HCH6g0405 1018 SUPERFAMILY Ankyrin repeat 786 900 IPR036770 -
HCH6g0405 1018 Gene3D - 760 910 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0405 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0018 HCH-Chr12:133799 HCH6g0405 HCH-Chr6:8230185 7.20E-114 dispersed
HCH12g1059 HCH-Chr12:7939992 HCH6g0405 HCH-Chr6:8230185 2.70E-29 dispersed
HCH6g0405 HCH-Chr6:8230185 HCH7g1139 HCH-Chr7:44205516 1.80E-39 dispersed
HCH6g0405 HCH-Chr6:8230185 HCH3g0131 HCH-Chr3:831086 1.30E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0405 . 179 1018 SBP-box Gene Family AT2G47070 52.0 2.9e-228 788.5
HCH6g0405 . 24 1018 SBP-box Gene Family AT3G60030 51.4 5.2e-259 891.0
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50570 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50570 66.1 1.2e-38 157.5
HCH6g0405 . 179 1018 SBP-box Gene Family AT2G47070 52.0 2.9e-228 788.5
HCH6g0405 . 24 1018 SBP-box Gene Family AT3G60030 51.4 5.2e-259 891.0
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50570 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50570 66.1 1.2e-38 157.5
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50670 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50670 66.1 1.2e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33693 PF03110 SBP 1.90E-29 No_clan HCH TF