Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0408 | ATGGCAGCCATGGCTCTTTCATCTTCATTCACAGGAAAGGCGGTTCCCTTGAATGCACCAACAGAGCCGTCATCAACGGTTCGCAGCAATGGAAGAGTCTCAATGAGAAAAACTGGAAGGCCATCAGCTCCCTCAGGCAGTCCTTGGTATGGCCCTGACCGTGTCAAGTACCTTGGACCATTTTCCGGGGAGTCCCCGTCCTACCTAACTGGTGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCAGCTGATCCCGAGACCTTTGCCAAGAACCGAGAGCTTGAAGTGATTCACAGTAGGTGGGCTATGCTTGGGGCTTTAGGATGTGTGTTCCCTGAGCTGCTTTCCAGGAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAAAGCATTTTGGCCATTTGGGCAACACAAGTTGTGCTAATGGGTGCAGTTGAGGGTTACCGTATTGCCGGAGGACCACTTGGTGAGATTACCGATCCAATTTACCCAGGTGGTAGCTTTGATCCCCTCGGGCTTGCCGATGATCCAGAGGCATTTGCAGAGCTAAAGGTCAAAGAACTAAAGAACGGCCGCCTTGCAATGTTTTCCATGTTTGGGTTTTTTGTGCAGGCCATTGTAACAGGAAAGGGTCCTTTGGAAAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCCACCAACTTTGTACCTGGGAAGTGA | 798 | 49.75 | MAAMALSSSFTGKAVPLNAPTEPSSTVRSNGRVSMRKTGRPSAPSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK | 265 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 8274928 | 8275725 | + | evm.model.ptg000003l.1384 | HCH6g0408 | 545902 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0408 | 265 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
HCH6g0408 | 265 | SUPERFAMILY | Chlorophyll a-b binding protein | 48 | 262 | - | - | |
HCH6g0408 | 265 | MobiDBLite | consensus disorder prediction | 11 | 36 | - | - | |
HCH6g0408 | 265 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 2 | 265 | IPR001344 | GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro) | |
HCH6g0408 | 265 | FunFam | Chlorophyll a-b binding protein, chloroplastic | 56 | 258 | - | - | |
HCH6g0408 | 265 | Gene3D | Chlorophyll a/b binding protein domain | 56 | 258 | - | - | |
HCH6g0408 | 265 | Pfam | Chlorophyll A-B binding protein | 66 | 232 | IPR022796 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH3g0789 | HCH-Chr3:5775660 | HCH6g0408 | HCH-Chr6:8274928 | 6.60E-131 | dispersed | |
HCH3g0790 | HCH-Chr3:5790920 | HCH6g0408 | HCH-Chr6:8274928 | 2.70E-136 | dispersed | |
HCH6g0408 | HCH-Chr6:8274928 | HCH7g0335 | HCH-Chr7:2374643 | 1.20E-120 | dispersed | |
HCH6g0408 | HCH-Chr6:8274928 | HCH12g1114 | HCH-Chr12:8672768 | 3.20E-97 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0408 | K08912 | - | csv:101203342 | 516.924 |