Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0408 ATGGCAGCCATGGCTCTTTCATCTTCATTCACAGGAAAGGCGGTTCCCTTGAATGCACCAACAGAGCCGTCATCAACGGTTCGCAGCAATGGAAGAGTCTCAATGAGAAAAACTGGAAGGCCATCAGCTCCCTCAGGCAGTCCTTGGTATGGCCCTGACCGTGTCAAGTACCTTGGACCATTTTCCGGGGAGTCCCCGTCCTACCTAACTGGTGAATTCCCTGGTGATTATGGTTGGGACACTGCAGGTCTATCAGCTGATCCCGAGACCTTTGCCAAGAACCGAGAGCTTGAAGTGATTCACAGTAGGTGGGCTATGCTTGGGGCTTTAGGATGTGTGTTCCCTGAGCTGCTTTCCAGGAATGGAGTCAAGTTTGGTGAAGCAGTTTGGTTCAAGGCTGGTTCACAAATCTTCAGTGAGGGTGGCCTTGACTATCTTGGAAACCCAAGTCTTGTTCATGCACAAAGCATTTTGGCCATTTGGGCAACACAAGTTGTGCTAATGGGTGCAGTTGAGGGTTACCGTATTGCCGGAGGACCACTTGGTGAGATTACCGATCCAATTTACCCAGGTGGTAGCTTTGATCCCCTCGGGCTTGCCGATGATCCAGAGGCATTTGCAGAGCTAAAGGTCAAAGAACTAAAGAACGGCCGCCTTGCAATGTTTTCCATGTTTGGGTTTTTTGTGCAGGCCATTGTAACAGGAAAGGGTCCTTTGGAAAACCTCGCAGATCATCTTGCTGATCCTGTCAACAACAATGCATGGGCTTATGCCACCAACTTTGTACCTGGGAAGTGA 798 49.75 MAAMALSSSFTGKAVPLNAPTEPSSTVRSNGRVSMRKTGRPSAPSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 8274928 8275725 + evm.model.ptg000003l.1384 HCH6g0408 545902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0408 265 MobiDBLite consensus disorder prediction 1 48 - -
HCH6g0408 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
HCH6g0408 265 MobiDBLite consensus disorder prediction 11 36 - -
HCH6g0408 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 265 IPR001344 GO:0009416(PANTHER)|GO:0009535(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0009941(PANTHER)|GO:0010287(PANTHER)|GO:0016020(InterPro)
HCH6g0408 265 FunFam Chlorophyll a-b binding protein, chloroplastic 56 258 - -
HCH6g0408 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
HCH6g0408 265 Pfam Chlorophyll A-B binding protein 66 232 IPR022796 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0789 HCH-Chr3:5775660 HCH6g0408 HCH-Chr6:8274928 6.60E-131 dispersed
HCH3g0790 HCH-Chr3:5790920 HCH6g0408 HCH-Chr6:8274928 2.70E-136 dispersed
HCH6g0408 HCH-Chr6:8274928 HCH7g0335 HCH-Chr7:2374643 1.20E-120 dispersed
HCH6g0408 HCH-Chr6:8274928 HCH12g1114 HCH-Chr12:8672768 3.20E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0408 K08912 - csv:101203342 516.924