Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH6g0414 | ATGGAGGAGGAAAAGAAAGTAAAGATGATAAAGAAAGAAGAAACAACGACGACGACGACAACAACAAGAAGACCATTGGATGATAATATATCAAATATTTACAATTACCCACTTTCAACCATCTTTGATAATTTCTATGATACTGACAAATCCTCTCTAGGGTTTATGGAGCTTCTAGGCGTTCATGATTTTACTCCTCCCTCCTCCGATTTTCCACCTTCAAATCTCACCACCGTCACCACCTCCGCCGCCGCTTCCTCCGCCATAAAAGACTTCTCCGATCAGCCGGCCACCCCCAACTCCTCCATCTCCTCAGCTTCTAGTGAAGAAGAAGAGCTACAACAACACAAGTCCAAAAAACTAGTGAAAGCAAAGAAGACAAATCAGAAGAGACAGAGAGAGCCAAGATTTGCATTCATGACAAAGAGCGAGGTTGATCATCTGGAAGATGGTTATAGATGGAGAAAGTACGGCCAAAAAGCTGTGAAAAACAGCCCCTTTCCTAGGAGCTATTATCGCTGCACCAGTGCAGCCTGTAATGTGAAGAAACGAGTGGAACGATCCTTCACTGATCCAAGCATAGTAGTGACTACCTATGAAGGTCAACACATTCATCCAAGCCCCGTCCTCAGTCGCTCGCCCCTCGTTGCTGCCACCGCTATTTCATCGGGTTCCACCACCAAGTCAGGAGCAATACTCCATAATCAGTACTTCCAAAACCAACCTTTTACTCAACAGTATTTGGGTACTAATTTTGAATGTAACCAGAATGTTGGATGGGCAAATGCTGCTGGTTTTGTTCAGGATCAGAAGAGAAGGATTTGCAATTCAAATACTGCTTTCCTTTCAGACAATGGGCTGCTTCAAGATGTCATCCCTCCTCACATGCTCAAACAGGACTAG | 903 | 44.3 | MEEEKKVKMIKKEETTTTTTTTRRPLDDNISNIYNYPLSTIFDNFYDTDKSSLGFMELLGVHDFTPPSSDFPPSNLTTVTTSAAASSAIKDFSDQPATPNSSISSASSEEEELQQHKSKKLVKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACNVKKRVERSFTDPSIVVTTYEGQHIHPSPVLSRSPLVAATAISSGSTTKSGAILHNQYFQNQPFTQQYLGTNFECNQNVGWANAAGFVQDQKRRICNSNTAFLSDNGLLQDVIPPHMLKQD | 300 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 9876410 | 9877877 | - | evm.model.ptg000003l.1378 | HCH6g0414 | 545908 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH6g0414 | 300 | MobiDBLite | consensus disorder prediction | 90 | 109 | - | - | |
| HCH6g0414 | 300 | SUPERFAMILY | WRKY DNA-binding domain | 140 | 208 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0414 | 300 | FunFam | WRKY transcription factor 57 | 134 | 208 | - | - | |
| HCH6g0414 | 300 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 89 | 238 | IPR044810 | GO:0003700(InterPro) | |
| HCH6g0414 | 300 | Pfam | WRKY DNA -binding domain | 149 | 206 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0414 | 300 | SMART | WRKY_cls | 148 | 207 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0414 | 300 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
| HCH6g0414 | 300 | MobiDBLite | consensus disorder prediction | 90 | 133 | - | - | |
| HCH6g0414 | 300 | Gene3D | WRKY domain | 119 | 209 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| HCH6g0414 | 300 | ProSiteProfiles | WRKY domain profile. | 143 | 208 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH6g0414 | HCH-Chr6:9876410 | HCH7g1019 | HCH-Chr7:41611714 | 5.00E-46 | dispersed | |
| HCH4g1092 | HCH-Chr4:7073456 | HCH6g0414 | HCH-Chr6:9876410 | 3.40E-44 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 33694 | PF03106 | WRKY | 6.70E-26 | CL0274 | HCH | TF |
Pathway information