Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0417 ATGGAACGCTCCAAAGTGATAGTTTTGTTAATATCAATTTTGTTGTTTCTTTGTTTAAGTATTTCAAAGGCATTGGATTGTCAACTAAACTTTCAGGATCCATACAGAGTTGCATACAGTGTTGTTGTCGACAAATCAGGACGGGGAAACTTCGTAACAGTTCAAAGCGCCATCGATTCAATTCCTTTTGGAAATCAACGATGGATTCGTATTCAAATCTCGAGTGGCATTTATTGGGAGAAGGTGACAATTCCCAATGGAAAATCATGCATTTTCCTTGATGGGGGTGACAGTAGATTCACTGAAATTCAATGGAATGACTATGCAACGACATATACAAGTGCAACCTTCAGTTCATTTGCTGAAAACATTGCAGTGAGAGGGATTACATTCAGGAATACTTATAACGCACCAGGAAATGTAAGGAGCAGGCAAGATATTGCACCAGCTGTGGCAGCTCTGGTTGAAGGAGATAAAACAGTTTTCTATAAATGTGGATTTATTGGGCTTCAAGATACGCTTTATGATAAACGGGGTCGCCATTATTACGTGCATTGCTACATTGAAGGTGTAATAGACTTCATCTTTGGCTCTGGACAGTCTCTGTTCGAGGAATGTGATATAAGAGTATCCGTGGATATGTATGCCTCATTTTTAAGTTATGGGTACATAACAGCCCAAGGAAGAAGCTCCCCATTTGAAAATAATGGGTTTGTTTTCAAGAGATGCTCTGTAATTGGAAGTGGAAGAGCTTATCTTGGAAGGGCTTACAGACCTTATTCAACAGTCGTTTTTTTCGCTTCTGATTTATCAAATTTGGTTGACCCTGCAGGCTGGGATATTTGGCAACAAGCTGGCCATGAGTTCGATTTGACATTTGCAGAAGTAAAATGTAATGGAGCAGGAGCCGATACTTCAAGGCGTGTGCCTTGGCTTAAGAGATTGCGTGAACCTGAAATCAGACGTTTTATACATCTTTCCTTTATCGATCAAGAAGGCTGGATTTCAAGATTGGCTCACATTTTCTAA 1029 39.84 MERSKVIVLLISILLFLCLSISKALDCQLNFQDPYRVAYSVVVDKSGRGNFVTVQSAIDSIPFGNQRWIRIQISSGIYWEKVTIPNGKSCIFLDGGDSRFTEIQWNDYATTYTSATFSSFAENIAVRGITFRNTYNAPGNVRSRQDIAPAVAALVEGDKTVFYKCGFIGLQDTLYDKRGRHYYVHCYIEGVIDFIFGSGQSLFEECDIRVSVDMYASFLSYGYITAQGRSSPFENNGFVFKRCSVIGSGRAYLGRAYRPYSTVVFFASDLSNLVDPAGWDIWQQAGHEFDLTFAEVKCNGAGADTSRRVPWLKRLREPEIRRFIHLSFIDQEGWISRLAHIF 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 10080166 10082866 + evm.model.ptg000003l.1375 HCH6g0417 545911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0417 342 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 13 336 - GO:0030599(PANTHER)|GO:0045490(PANTHER)|GO:0052689(PANTHER)
HCH6g0417 342 Pfam Pectinesterase 41 330 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
HCH6g0417 342 SUPERFAMILY Pectin lyase-like 37 337 IPR011050 -
HCH6g0417 342 FunFam Pectinesterase 35 339 - -
HCH6g0417 342 Gene3D - 38 341 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0417 HCH-Chr6:10080166 HCH6g1323 HCH-Chr6:47351196 6.10E-64 dispersed
HCH6g0412 HCH-Chr6:9212307 HCH6g0417 HCH-Chr6:10080166 5.50E-166 proximal
HCH6g0417 HCH-Chr6:10080166 HCH6g0418 HCH-Chr6:10138815 2.00E-168 tandem
HCH10g0935 HCH-Chr10:12635275 HCH6g0417 HCH-Chr6:10080166 5.70E-86 transposed
HCH6g0440 HCH-Chr6:12100569 HCH6g0417 HCH-Chr6:10080166 8.90E-144 transposed
HCH6g1420 HCH-Chr6:48006595 HCH6g0417 HCH-Chr6:10080166 1.80E-87 transposed
HCH4g1103 HCH-Chr4:7208766 HCH6g0417 HCH-Chr6:10080166 2.60E-47 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0417 - - - 0.0