Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0432 ATGGAAGAGACTTTTGTTCCTTTTCGTGGGATTAAGAATGACCTCAAAGGAAGGTTAGATTGTTATAGACAAGACTGGATTGGTGGTTTGAAAGCTGGTTACAGGATTTTGGCTCCAACAACTTACATATTTTTTGCCTCTGCAATTCCTGTTATTTCATTTGGTGAACAATTGGAGAGGAGTACTGATGGGGTGCTGACTGCAGTTCAAACCTTAGCCTCTACAGCTGTTTGTGGGATCATACACTCTATTGTTGGAGGTCAACCGTTGCTTATCTTAGGAGTTGCAGAGCCTACTGTTATTATGTACACCTTCATGTTTAATTTTGCTAAGGAACGACCCGAGTTAGGCCGTAATTTGTTTCTAGCATGGAGTGGATGGGTATGTGTTTGGACTGCAGCCTTGCTGTTCTTAATGGCTATATTAGGAGCTTGCTCCATCATTAATAGGTTCACACGTGTGGCTGGTGAATTGTTCGGTTTGCTTATTGCAATGCTTTTCATGCAGCAAGCAGTCAAAGGACTTGTGGATGAATTTCGCATTCCTGAACGTGAAAATCTGAAATTATTAGAGTTTATACCTTCATGGAGGTTTGCCAATGGGATGTTTGCCCTGGTACTGTCATTTGGCCTTCTACTCACTGCTTTAAGAAGTCGAAAAGCAAGGTCATGGCGTTATGGATCTGGTTGGCTTAGAAGTTTGATAGCAGACTATGGAGTGCCAATTATGGTCCTCGTCTGGACAGGTATTTCGTATGTTCCGTCAAGAAGTATCCCACACGGTATTCCCAGGCGACTCTTCAGCCCAAATCCATGGTCTCCCGGTGCATATGAAAATTGGACTGTAATTAAGGATATGCTTGATGTTCCAGTTATTCATATATGTGGAGCTTTCATTCCTGCAACAATGATTGCGGTGCTTTACTATTTCGATCATAGTGTCGCATCTCAACTTGCTCAGCAGAAAGAGTTCAATTTGAGGAAACCATCTTCTTATCATTATGATTTACTTCTATTGGGATTCTTGACATTAATGTGTGGACTTCTTGGAATCCCTCCATCTAATGGAGTCATCCCACAATCTCCAATGCATACAAAGAGCCTGGCCACTCTCAAACACCAGTTGCTCAGGAATAAACTTGTAGCAACAGCACGCAGTAGTATGCGAAAGAATGCTAGCTTGGGACAGTTGTATGGAAATATGCAAGAAGCATATCAACAGATGCAAACCCCCCTGATTTATCAACAGTCCTCAGTTTCTGGACTGAAAGAACTGAAAGAAACAACCATTCAGGCAGCTTCTAGTATGGGCAGTTTTGATGCTCCAGTTGATGAAACAATGTTTGACATCGAGAAGGAAATTGATGATCTATTACCTGTAGAGGTGAAAGAACAGCGAGTCAGTAATTTGCTTCAAGCTGCAATGGTGGGAGGATGTGTTGCAGCCATGCCGGTCCTGAAAATGATCCCGACCTCGGTTCTCTGGGGTTACTTTGCCTTCATGGCCATTGAAAGTTTGCCTGGTAATCAGTTTTGGGAAAGAATTCTGTTGCTCTTCACTGCACCCAGCAGAAGATACAAAGTTCTTGAAGATTATCACGCGACTTTTGTTGAAACTGTGCCGTTCAAATCAATTGCACTTTTCACCATTTTCCAAACATTTTATTTGTTCATATGCTTTGGACTAACATGGGTTCCAATTGCTGGGGTTATGTTTCCTCTGATGATCATGCTACTTGTTCCTGTAAGACAATACCTTCTTCCCAAGTTTTTCAAAGGGGCACATCTCCAAGACCTTGATGCAGCAGAATATGAAGAAGCACCAGCTTTACCATTCAATCTCGCAACGGAAGCTGAGCTGGGTGCTGGGGCCTCTTTTGGTGGGGATGGAGAGATTTTAGATGAGGCTATCACCCGAAGCCGTGGAGAGTTTAGGCATATTAGTAGTCCTAAGATCACAAGCTCCACGACAACGCCAGTACATGACCGCAAAAGTTTCGACAGCCCTCGTCGCTCTTACAGCCCTCGGGTAAGTGAGCTAAGAGGAGAGCATAGTCCTCAATCCGGTGGAAGAGGGACACCGGGTCAGAAACATGGAGAAGCTAAACCATCCAATTTGGGAAAGAGTCCTTTTAATACTACATCAAAGTAG 2151 43.28 MEETFVPFRGIKNDLKGRLDCYRQDWIGGLKAGYRILAPTTYIFFASAIPVISFGEQLERSTDGVLTAVQTLASTAVCGIIHSIVGGQPLLILGVAEPTVIMYTFMFNFAKERPELGRNLFLAWSGWVCVWTAALLFLMAILGACSIINRFTRVAGELFGLLIAMLFMQQAVKGLVDEFRIPERENLKLLEFIPSWRFANGMFALVLSFGLLLTALRSRKARSWRYGSGWLRSLIADYGVPIMVLVWTGISYVPSRSIPHGIPRRLFSPNPWSPGAYENWTVIKDMLDVPVIHICGAFIPATMIAVLYYFDHSVASQLAQQKEFNLRKPSSYHYDLLLLGFLTLMCGLLGIPPSNGVIPQSPMHTKSLATLKHQLLRNKLVATARSSMRKNASLGQLYGNMQEAYQQMQTPLIYQQSSVSGLKELKETTIQAASSMGSFDAPVDETMFDIEKEIDDLLPVEVKEQRVSNLLQAAMVGGCVAAMPVLKMIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPSRRYKVLEDYHATFVETVPFKSIALFTIFQTFYLFICFGLTWVPIAGVMFPLMIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPALPFNLATEAELGAGASFGGDGEILDEAITRSRGEFRHISSPKITSSTTTPVHDRKSFDSPRRSYSPRVSELRGEHSPQSGGRGTPGQKHGEAKPSNLGKSPFNTTSK 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 11121183 11124823 + evm.model.ptg000003l.1360 HCH6g0432 545926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0432 716 MobiDBLite consensus disorder prediction 647 716 - -
HCH6g0432 716 FunFam probable boron transporter 2 18 60 - -
HCH6g0432 716 MobiDBLite consensus disorder prediction 647 662 - -
HCH6g0432 716 PANTHER ANION EXCHANGE PROTEIN 4 641 IPR003020 GO:0005452(InterPro)|GO:0005886(PANTHER)|GO:0006820(InterPro)|GO:0016020(InterPro)|GO:0022857(PANTHER)|GO:0046715(PANTHER)|GO:0050801(PANTHER)|GO:0055085(PANTHER)
HCH6g0432 716 MobiDBLite consensus disorder prediction 663 678 - -
HCH6g0432 716 Pfam HCO3- transporter integral membrane domain 201 372 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH6g0432 716 Pfam HCO3- transporter integral membrane domain 460 602 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
HCH6g0432 716 Pfam HCO3- transporter integral membrane domain 7 180 IPR011531 GO:0006820(InterPro)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0342 HCH-Chr3:2188633 HCH6g0432 HCH-Chr6:11121183 2.0e-311 dispersed
HCH4g0416 HCH-Chr4:2710035 HCH6g0432 HCH-Chr6:11121183 1.80E-218 dispersed
HCH6g0432 HCH-Chr6:11121183 HCH6g0199 HCH-Chr6:2666437 1.60E-223 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0432 K24194 - csv:101205388 1337.78