Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0442 | ATGTCGTTGATTTCAGCTTCTAACACCGCCGGTATATTGAAACTGGTCTCTTTCTGGTTTCTAAAGCGGTTTCTTTTATTGTGGTTTGTGATTTCCATCACCGATGCCGATGTACCTGGTTTACCGCCATTATTATCTCCAAGATATGCACCGGTTGCACCTGCTATTCTTGATATGCCTCTACCAGCTAAATTGCCTCTGGCCCACCAATACCACCACCGGAAATATGTGTCACCGCATAGTGCACCAGCAGCTGGACTAGCTCCTTCCTCTCCTACTTACTATGGACCTCTTATAACTTCTGGTCACCCAGTCCCACCCAAAAGGTCAAGTTTTTCTAAACCGTTGATGAAGAGTGGATCAACTCCTCCAGATGGTAGCCTCGAAAATATTGCTCCTGTGCAGTCCAGTGCTGGTGCAATTCCCTCTGGTTTACCTCAGCCACCACTTTCTCCTAATGCATCAGACTGTTGCAAACCTGACATGGTACTGAAACGAGGAAGCGAGGGTTGCCATTGTGTCTATCCCATAAAAATTGATCTTCTCCTTGTGAATGTATCACAGAATCCTAATTGGAGTCTTTTTCTTGAAGAGTTAGCTTCCCAACTTAGTTTGCGAGTCTCTCAGATTGAGCTCATTAACTTTTATGTACTTAGCTTATCAAGGTTAAATATCTCAATGGACATTACTCCACATACCGGGATCAGCTTCTCTGCAGTTGATGCATCTGCAATAAATTCTTCACTGACAAAGCATAAGGTTCATTTAGACCCTGTACTGGTTGGTGATTACAATCTTCTCAATTTAACCTGGTTTAAACCTCCGCTTCCTTCTCAAGCTCCTCTAGTTTCCATATCACCTGTAACAGCTCCAGCATATCATTTACCAACCTCAACATTATCAAGTGCTCCTAATAAAGGCCGGCATTCAAATCTGACACTTCTTCTTGGTGTTGGTGCTGGTCTGCTGTTCCTTGCCATTTTATTTGTGTTGGTAGTTTGTTTATACACATCTTATCATGGGAAGACTAAAACACCACCCATGGCAGCTGAAAAACCAAGGGTTGATGATAAAGTTCCTGCAGTAGGATCATTTCCTCACCCATCGAGTATGAGATTTCTAACGTATGAAGAACTTAAAGATGCAACTAATAACTTTGAAGCATCAAGTATATTGGGGGAAGGTGGTTTTGGCAGGGTTTTTAAGGGTATCTTAAGTGATGGCACACTTGTGGCAATCAAGAGGCTTACAACTGGAGGGCAACAAGGCGACAAAGAGTTTTTGGTTGAGGTTGATATGCTTAGCAGGTTGCACCACCGTAATCTTGTAAAACTGGTTGGCTATTACTCAAGTCGTGACTCTTCACAAAACCTGCTATGCTATGAACTTGTCCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTCTGGGTGTTAACTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTAGATGCGGCCCGAGGACTTGCTTACCTTCATGAGGACTCACAACCTTGTGTTATCCACAGAGACTTTAAGGCATCTAATATATTGCTCGAGAACAACTTTAATGCCAAAGTTGCGGACTTTGGTCTTGCTAAGCAGGCTCCTGAAGGCAGAGCAAATTACCTATCTACTCGTGTAATGGGCACATTTGGGTATGTTGCTCCCGAGTATGCAATGACTGGTCATCTACTTGTTAAAAGTGACGTTTATAGTTACGGAGTTGTTCTTCTTGAGTTGCTCACTGGAAGGAAACCTGTGGATATGTCACAGCCGTCTGGGCAAGAGAACCTGGTCACATGGGCAAGGCCCATTTTAAGAGACAAGGATAGGTTGGAAGAACTTGCTGATCCACAACTTGGAGGAAAGTATCCAAAGGAAGACTTCGTACGAGTGTGTACTATTGCTGCTGCGTGCGTTGCTCCCGAGGCTAGCCAACGTCCAACTATGGGTGAAGTGGTACAGTCTCTTAAAATGGTGCAGCGCATCACAGAATACCAAGATGCGGTGATACCGTCCTCCAACAACCGGACCAATCTTAGGCAATCTTCTACAACTTTCGAATCTGATGGGTCCTCTTCAATGTTCTCTTCTGGCCCTTATTCCGGTTTAAGTGGTTTCGACAACGACAATGTTTCTCGGTCTGCAATTTTCTCTGAAGATCTTCACGAGGGACGATGA | 2193 | 44.32 | MSLISASNTAGILKLVSFWFLKRFLLLWFVISITDADVPGLPPLLSPRYAPVAPAILDMPLPAKLPLAHQYHHRKYVSPHSAPAAGLAPSSPTYYGPLITSGHPVPPKRSSFSKPLMKSGSTPPDGSLENIAPVQSSAGAIPSGLPQPPLSPNASDCCKPDMVLKRGSEGCHCVYPIKIDLLLVNVSQNPNWSLFLEELASQLSLRVSQIELINFYVLSLSRLNISMDITPHTGISFSAVDASAINSSLTKHKVHLDPVLVGDYNLLNLTWFKPPLPSQAPLVSISPVTAPAYHLPTSTLSSAPNKGRHSNLTLLLGVGAGLLFLAILFVLVVCLYTSYHGKTKTPPMAAEKPRVDDKVPAVGSFPHPSSMRFLTYEELKDATNNFEASSILGEGGFGRVFKGILSDGTLVAIKRLTTGGQQGDKEFLVEVDMLSRLHHRNLVKLVGYYSSRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFNAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPQLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITEYQDAVIPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSGFDNDNVSRSAIFSEDLHEGR | 730 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 12270439 | 12276191 | + | evm.model.ptg000003l.1350 | HCH6g0442 | 545936 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0442 | 730 | ProSiteProfiles | Protein kinase domain profile. | 386 | 664 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH6g0442 | 730 | Gene3D | Transferase(Phosphotransferase) domain 1 | 464 | 684 | - | - | |
HCH6g0442 | 730 | MobiDBLite | consensus disorder prediction | 677 | 715 | - | - | |
HCH6g0442 | 730 | PANTHER | OS01G0750732 PROTEIN | 156 | 703 | IPR050885 | - | |
HCH6g0442 | 730 | SUPERFAMILY | Protein kinase-like (PK-like) | 360 | 663 | IPR011009 | - | |
HCH6g0442 | 730 | MobiDBLite | consensus disorder prediction | 114 | 129 | - | - | |
HCH6g0442 | 730 | MobiDBLite | consensus disorder prediction | 106 | 129 | - | - | |
HCH6g0442 | 730 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 510 | 522 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH6g0442 | 730 | ProSitePatterns | Protein kinases ATP-binding region signature. | 392 | 414 | IPR017441 | GO:0005524(InterPro) | |
HCH6g0442 | 730 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 366 | 463 | - | - | |
HCH6g0442 | 730 | Gene3D | Phosphorylase Kinase; domain 1 | 353 | 463 | - | - | |
HCH6g0442 | 730 | FunFam | Receptor-like serine/threonine-protein kinase ALE2 | 464 | 681 | - | - | |
HCH6g0442 | 730 | Pfam | Protein tyrosine and serine/threonine kinase | 389 | 661 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH5g0141 | HCH-Chr5:841047 | HCH6g0442 | HCH-Chr6:12270439 | 2.60E-107 | dispersed | |
HCH6g0404 | HCH-Chr6:8033994 | HCH6g0442 | HCH-Chr6:12270439 | 3.10E-74 | dispersed | |
HCH6g0442 | HCH-Chr6:12270439 | HCH8g0646 | HCH-Chr8:43267767 | 3.10E-110 | dispersed | |
HCH8g1000 | HCH-Chr8:46079452 | HCH6g0442 | HCH-Chr6:12270439 | 1.80E-69 | dispersed | |
HCH9g0300 | HCH-Chr9:1855074 | HCH6g0442 | HCH-Chr6:12270439 | 1.00E-62 | transposed | |
HCH4g1125 | HCH-Chr4:7337536 | HCH6g0442 | HCH-Chr6:12270439 | 1.70E-77 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
81560 | PF00069 | Pkinase | 2.80E-44 | CL0016 | HCH | PK |
Pathway information
