Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0442 ATGTCGTTGATTTCAGCTTCTAACACCGCCGGTATATTGAAACTGGTCTCTTTCTGGTTTCTAAAGCGGTTTCTTTTATTGTGGTTTGTGATTTCCATCACCGATGCCGATGTACCTGGTTTACCGCCATTATTATCTCCAAGATATGCACCGGTTGCACCTGCTATTCTTGATATGCCTCTACCAGCTAAATTGCCTCTGGCCCACCAATACCACCACCGGAAATATGTGTCACCGCATAGTGCACCAGCAGCTGGACTAGCTCCTTCCTCTCCTACTTACTATGGACCTCTTATAACTTCTGGTCACCCAGTCCCACCCAAAAGGTCAAGTTTTTCTAAACCGTTGATGAAGAGTGGATCAACTCCTCCAGATGGTAGCCTCGAAAATATTGCTCCTGTGCAGTCCAGTGCTGGTGCAATTCCCTCTGGTTTACCTCAGCCACCACTTTCTCCTAATGCATCAGACTGTTGCAAACCTGACATGGTACTGAAACGAGGAAGCGAGGGTTGCCATTGTGTCTATCCCATAAAAATTGATCTTCTCCTTGTGAATGTATCACAGAATCCTAATTGGAGTCTTTTTCTTGAAGAGTTAGCTTCCCAACTTAGTTTGCGAGTCTCTCAGATTGAGCTCATTAACTTTTATGTACTTAGCTTATCAAGGTTAAATATCTCAATGGACATTACTCCACATACCGGGATCAGCTTCTCTGCAGTTGATGCATCTGCAATAAATTCTTCACTGACAAAGCATAAGGTTCATTTAGACCCTGTACTGGTTGGTGATTACAATCTTCTCAATTTAACCTGGTTTAAACCTCCGCTTCCTTCTCAAGCTCCTCTAGTTTCCATATCACCTGTAACAGCTCCAGCATATCATTTACCAACCTCAACATTATCAAGTGCTCCTAATAAAGGCCGGCATTCAAATCTGACACTTCTTCTTGGTGTTGGTGCTGGTCTGCTGTTCCTTGCCATTTTATTTGTGTTGGTAGTTTGTTTATACACATCTTATCATGGGAAGACTAAAACACCACCCATGGCAGCTGAAAAACCAAGGGTTGATGATAAAGTTCCTGCAGTAGGATCATTTCCTCACCCATCGAGTATGAGATTTCTAACGTATGAAGAACTTAAAGATGCAACTAATAACTTTGAAGCATCAAGTATATTGGGGGAAGGTGGTTTTGGCAGGGTTTTTAAGGGTATCTTAAGTGATGGCACACTTGTGGCAATCAAGAGGCTTACAACTGGAGGGCAACAAGGCGACAAAGAGTTTTTGGTTGAGGTTGATATGCTTAGCAGGTTGCACCACCGTAATCTTGTAAAACTGGTTGGCTATTACTCAAGTCGTGACTCTTCACAAAACCTGCTATGCTATGAACTTGTCCCAAATGGAAGCTTGGAGGCCTGGCTCCATGGTCCTCTGGGTGTTAACTGTCCTTTGGATTGGGACACCAGAATGAAGATTGCACTAGATGCGGCCCGAGGACTTGCTTACCTTCATGAGGACTCACAACCTTGTGTTATCCACAGAGACTTTAAGGCATCTAATATATTGCTCGAGAACAACTTTAATGCCAAAGTTGCGGACTTTGGTCTTGCTAAGCAGGCTCCTGAAGGCAGAGCAAATTACCTATCTACTCGTGTAATGGGCACATTTGGGTATGTTGCTCCCGAGTATGCAATGACTGGTCATCTACTTGTTAAAAGTGACGTTTATAGTTACGGAGTTGTTCTTCTTGAGTTGCTCACTGGAAGGAAACCTGTGGATATGTCACAGCCGTCTGGGCAAGAGAACCTGGTCACATGGGCAAGGCCCATTTTAAGAGACAAGGATAGGTTGGAAGAACTTGCTGATCCACAACTTGGAGGAAAGTATCCAAAGGAAGACTTCGTACGAGTGTGTACTATTGCTGCTGCGTGCGTTGCTCCCGAGGCTAGCCAACGTCCAACTATGGGTGAAGTGGTACAGTCTCTTAAAATGGTGCAGCGCATCACAGAATACCAAGATGCGGTGATACCGTCCTCCAACAACCGGACCAATCTTAGGCAATCTTCTACAACTTTCGAATCTGATGGGTCCTCTTCAATGTTCTCTTCTGGCCCTTATTCCGGTTTAAGTGGTTTCGACAACGACAATGTTTCTCGGTCTGCAATTTTCTCTGAAGATCTTCACGAGGGACGATGA 2193 44.32 MSLISASNTAGILKLVSFWFLKRFLLLWFVISITDADVPGLPPLLSPRYAPVAPAILDMPLPAKLPLAHQYHHRKYVSPHSAPAAGLAPSSPTYYGPLITSGHPVPPKRSSFSKPLMKSGSTPPDGSLENIAPVQSSAGAIPSGLPQPPLSPNASDCCKPDMVLKRGSEGCHCVYPIKIDLLLVNVSQNPNWSLFLEELASQLSLRVSQIELINFYVLSLSRLNISMDITPHTGISFSAVDASAINSSLTKHKVHLDPVLVGDYNLLNLTWFKPPLPSQAPLVSISPVTAPAYHLPTSTLSSAPNKGRHSNLTLLLGVGAGLLFLAILFVLVVCLYTSYHGKTKTPPMAAEKPRVDDKVPAVGSFPHPSSMRFLTYEELKDATNNFEASSILGEGGFGRVFKGILSDGTLVAIKRLTTGGQQGDKEFLVEVDMLSRLHHRNLVKLVGYYSSRDSSQNLLCYELVPNGSLEAWLHGPLGVNCPLDWDTRMKIALDAARGLAYLHEDSQPCVIHRDFKASNILLENNFNAKVADFGLAKQAPEGRANYLSTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPSGQENLVTWARPILRDKDRLEELADPQLGGKYPKEDFVRVCTIAAACVAPEASQRPTMGEVVQSLKMVQRITEYQDAVIPSSNNRTNLRQSSTTFESDGSSSMFSSGPYSGLSGFDNDNVSRSAIFSEDLHEGR 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 12270439 12276191 + evm.model.ptg000003l.1350 HCH6g0442 545936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0442 730 ProSiteProfiles Protein kinase domain profile. 386 664 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0442 730 Gene3D Transferase(Phosphotransferase) domain 1 464 684 - -
HCH6g0442 730 MobiDBLite consensus disorder prediction 677 715 - -
HCH6g0442 730 PANTHER OS01G0750732 PROTEIN 156 703 IPR050885 -
HCH6g0442 730 SUPERFAMILY Protein kinase-like (PK-like) 360 663 IPR011009 -
HCH6g0442 730 MobiDBLite consensus disorder prediction 114 129 - -
HCH6g0442 730 MobiDBLite consensus disorder prediction 106 129 - -
HCH6g0442 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0442 730 ProSitePatterns Protein kinases ATP-binding region signature. 392 414 IPR017441 GO:0005524(InterPro)
HCH6g0442 730 FunFam Receptor-like serine/threonine-protein kinase ALE2 366 463 - -
HCH6g0442 730 Gene3D Phosphorylase Kinase; domain 1 353 463 - -
HCH6g0442 730 FunFam Receptor-like serine/threonine-protein kinase ALE2 464 681 - -
HCH6g0442 730 Pfam Protein tyrosine and serine/threonine kinase 389 661 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH5g0141 HCH-Chr5:841047 HCH6g0442 HCH-Chr6:12270439 2.60E-107 dispersed
HCH6g0404 HCH-Chr6:8033994 HCH6g0442 HCH-Chr6:12270439 3.10E-74 dispersed
HCH6g0442 HCH-Chr6:12270439 HCH8g0646 HCH-Chr8:43267767 3.10E-110 dispersed
HCH8g1000 HCH-Chr8:46079452 HCH6g0442 HCH-Chr6:12270439 1.80E-69 dispersed
HCH9g0300 HCH-Chr9:1855074 HCH6g0442 HCH-Chr6:12270439 1.00E-62 transposed
HCH4g1125 HCH-Chr4:7337536 HCH6g0442 HCH-Chr6:12270439 1.70E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81560 PF00069 Pkinase 2.80E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0442 - - - 0.0