Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0488 ATGTCTTTGCACAAAACTTATAAACAGAACTGGTATTGCTATGCGAAGACGGTGGCAGAGCAGACGGCGTGGGAGGTGGCGGAGGAGAAAGGGGTGGATCTAGTGGTGGTTAATCCCATGTTGGTGTTGGGACCAATGTTGCAAGGAACTGTAAATGTAAGTGTGGTTCATATAATGAAGTATTTAACAGGATCAGCAAAGACTTATGTGAATGCAGTTCAAGGCTATGTGGATGTGAAGGATGTTGCAAATGCTCACCTTTTGGTATATGAAACTCATTCTGCAACTGGAAGATATATTTGTGTTGAAAGTATGCTTCATCGTGGAGAATTGGTGGAGATTTTGGCCAAGTTCTTCCCTGAGTATCCCCTTCCTACGAAGTGCTCTGATGAGGTGAATCCCAGGAAGGAACCCTACAAATTCACTGTTCAGAAGCTCAAGTCATTGGGAATGGAGTTCACACCTGTGAAGCAGTGTCTTTACGAAACTGTGAAAAGTTTGCAAGAGAAGGGTCATCTTCCACCTCCAATCCAACACCAACATTTGATGATGATTTCCAAGTTGTGA 567 43.39 MSLHKTYKQNWYCYAKTVAEQTAWEVAEEKGVDLVVVNPMLVLGPMLQGTVNVSVVHIMKYLTGSAKTYVNAVQGYVDVKDVANAHLLVYETHSATGRYICVESMLHRGELVEILAKFFPEYPLPTKCSDEVNPRKEPYKFTVQKLKSLGMEFTPVKQCLYETVKSLQEKGHLPPPIQHQHLMMISKL 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 17091363 17092871 - evm.model.ptg000003l.1304 HCH6g0488 545982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0488 188 Gene3D - 2 187 - -
HCH6g0488 188 Pfam NAD dependent epimerase/dehydratase family 6 95 IPR001509 -
HCH6g0488 188 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 168 IPR036291 -
HCH6g0488 188 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 166 IPR050425 GO:0016616(PANTHER)
HCH6g0488 188 FunFam Os02g0811600 protein 11 175 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0288 HCH-Chr6:4073912 HCH6g0488 HCH-Chr6:17091363 1.20E-85 dispersed
HCH6g0289 HCH-Chr6:4083619 HCH6g0488 HCH-Chr6:17091363 1.30E-79 dispersed
HCH6g0488 HCH-Chr6:17091363 HCH6g0287 HCH-Chr6:4062714 2.00E-85 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0488 K09753 - csv:116401652 310.842