Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0499 | ATGGGTTTGGATGATCTTTGTAACACAGGCTTGGTTTTAGGCTTAGGCTTCACAGAAACTAGTTCTTCAAAGCCAGCTGCTGATAATCAGATCATAAAGTTGAAAAAACCTTGCTCCAATTTTGAGCCATCTTTGACTTTGGGTATCTCTGGAGATAATCATTTGAATCGGCAAGCTTCCTCTCATAGTCATAGCGCTGTTTCTTCCTTCTCTAGTGGTAGGGTTAACGTTAAAAGGGAGAGAGATCTTAGCTTTGAAGAAGTTGATTTAGAAAGAGTTTCTTCAAGAGTAGTCAGCGATGAAGATGAAGACGGTTCTAATACTAGAAAGAAGCTTAGACTCACCAAACAACAGTCTGCTCTCTTGGAAGAAAGCTTTAAACGAAATAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCGAGGGAATTAAATCTGCGCCCTCGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCACGGACGAAACTAAAACAAACAGAGGTAGATTGTGAGTTCTTGAAGAAGTGTTGTGAGACGCTTACGGATGAAAATAGAAGATTACAAAAAGAGATCCAAGAATTGAAGACACTTAAACTTTCACAGCCTTTTTACATGCATATGCCTGCAGCAACGCTCAGTATGTGCCCATCGTGTGAACGAATTGGTGGGGTTAGCGATAGCGCTTCGAAACCTAAATTTTCTATGGCTCCTAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTATGCTGCTTGTTAA | 762 | 40.68 | MGLDDLCNTGLVLGLGFTETSSSKPAADNQIIKLKKPCSNFEPSLTLGISGDNHLNRQASSHSHSAVSSFSSGRVNVKRERDLSFEEVDLERVSSRVVSDEDEDGSNTRKKLRLTKQQSALLEESFKRNSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEIQELKTLKLSQPFYMHMPAATLSMCPSCERIGGVSDSASKPKFSMAPKPHFYNPFSNPYAAC | 253 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 18226695 | 18227713 | + | evm.model.ptg000003l.1293 | HCH6g0499 | 545993 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0499 | 253 | FunFam | Homeobox-leucine zipper protein 18 | 94 | 170 | - | - | |
HCH6g0499 | 253 | ProSiteProfiles | 'Homeobox' domain profile. | 105 | 165 | IPR001356 | GO:0003677(InterPro) | |
HCH6g0499 | 253 | Gene3D | - | 102 | 170 | - | - | |
HCH6g0499 | 253 | SMART | halz | 165 | 208 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g0499 | 253 | SUPERFAMILY | Homeodomain-like | 98 | 166 | IPR009057 | - | |
HCH6g0499 | 253 | Pfam | Homeobox associated leucine zipper | 165 | 198 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
HCH6g0499 | 253 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 9 | 245 | IPR050762 | - | |
HCH6g0499 | 253 | ProSitePatterns | 'Homeobox' domain signature. | 140 | 163 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
HCH6g0499 | 253 | SMART | HOX_1 | 107 | 169 | IPR001356 | GO:0003677(InterPro) | |
HCH6g0499 | 253 | Pfam | Homeodomain | 109 | 163 | IPR001356 | GO:0003677(InterPro) | |
HCH6g0499 | 253 | CDD | homeodomain | 109 | 166 | IPR001356 | GO:0003677(InterPro) | |
HCH6g0499 | 253 | Coils | Coil | 171 | 201 | - | - | |
HCH6g0499 | 253 | MobiDBLite | consensus disorder prediction | 52 | 72 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH12g0526 | HCH-Chr12:3074291 | HCH6g0499 | HCH-Chr6:18226695 | 1.90E-57 | dispersed | |
HCH6g0499 | HCH-Chr6:18226695 | HCH6g1036 | HCH-Chr6:45096222 | 5.30E-49 | dispersed | |
HCH6g0499 | HCH-Chr6:18226695 | HCH14g0398 | HCH-Chr14:33013592 | 6.00E-85 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33701 | PF00046 | Homeodomain | 4.70E-16 | CL0123 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH6g0499 | K09338 | - | rcu:8267677 | 356.681 |