Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0499 ATGGGTTTGGATGATCTTTGTAACACAGGCTTGGTTTTAGGCTTAGGCTTCACAGAAACTAGTTCTTCAAAGCCAGCTGCTGATAATCAGATCATAAAGTTGAAAAAACCTTGCTCCAATTTTGAGCCATCTTTGACTTTGGGTATCTCTGGAGATAATCATTTGAATCGGCAAGCTTCCTCTCATAGTCATAGCGCTGTTTCTTCCTTCTCTAGTGGTAGGGTTAACGTTAAAAGGGAGAGAGATCTTAGCTTTGAAGAAGTTGATTTAGAAAGAGTTTCTTCAAGAGTAGTCAGCGATGAAGATGAAGACGGTTCTAATACTAGAAAGAAGCTTAGACTCACCAAACAACAGTCTGCTCTCTTGGAAGAAAGCTTTAAACGAAATAGCACTCTCAATCCTAAACAGAAGCAAGCTTTAGCGAGGGAATTAAATCTGCGCCCTCGACAAGTTGAAGTATGGTTTCAGAATAGGAGAGCACGGACGAAACTAAAACAAACAGAGGTAGATTGTGAGTTCTTGAAGAAGTGTTGTGAGACGCTTACGGATGAAAATAGAAGATTACAAAAAGAGATCCAAGAATTGAAGACACTTAAACTTTCACAGCCTTTTTACATGCATATGCCTGCAGCAACGCTCAGTATGTGCCCATCGTGTGAACGAATTGGTGGGGTTAGCGATAGCGCTTCGAAACCTAAATTTTCTATGGCTCCTAAGCCTCACTTTTACAACCCCTTCTCCAATCCTTATGCTGCTTGTTAA 762 40.68 MGLDDLCNTGLVLGLGFTETSSSKPAADNQIIKLKKPCSNFEPSLTLGISGDNHLNRQASSHSHSAVSSFSSGRVNVKRERDLSFEEVDLERVSSRVVSDEDEDGSNTRKKLRLTKQQSALLEESFKRNSTLNPKQKQALARELNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKEIQELKTLKLSQPFYMHMPAATLSMCPSCERIGGVSDSASKPKFSMAPKPHFYNPFSNPYAAC 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 18226695 18227713 + evm.model.ptg000003l.1293 HCH6g0499 545993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0499 253 FunFam Homeobox-leucine zipper protein 18 94 170 - -
HCH6g0499 253 ProSiteProfiles 'Homeobox' domain profile. 105 165 IPR001356 GO:0003677(InterPro)
HCH6g0499 253 Gene3D - 102 170 - -
HCH6g0499 253 SMART halz 165 208 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0499 253 SUPERFAMILY Homeodomain-like 98 166 IPR009057 -
HCH6g0499 253 Pfam Homeobox associated leucine zipper 165 198 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
HCH6g0499 253 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 9 245 IPR050762 -
HCH6g0499 253 ProSitePatterns 'Homeobox' domain signature. 140 163 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
HCH6g0499 253 SMART HOX_1 107 169 IPR001356 GO:0003677(InterPro)
HCH6g0499 253 Pfam Homeodomain 109 163 IPR001356 GO:0003677(InterPro)
HCH6g0499 253 CDD homeodomain 109 166 IPR001356 GO:0003677(InterPro)
HCH6g0499 253 Coils Coil 171 201 - -
HCH6g0499 253 MobiDBLite consensus disorder prediction 52 72 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0526 HCH-Chr12:3074291 HCH6g0499 HCH-Chr6:18226695 1.90E-57 dispersed
HCH6g0499 HCH-Chr6:18226695 HCH6g1036 HCH-Chr6:45096222 5.30E-49 dispersed
HCH6g0499 HCH-Chr6:18226695 HCH14g0398 HCH-Chr14:33013592 6.00E-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33701 PF00046 Homeodomain 4.70E-16 CL0123 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0499 K09338 - rcu:8267677 356.681