Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0508 ATGCTTCGTAGCTTACTTCCTCAATCATCAATCAATTCCACCACAACCAATTCTTCTATTCCAATGAAGTCTTCTAAGCGTCCCGACCGTGAATTACCTTCCACTGCTGGAGATCCTTACCCTGACGATCCTTCTTCCAAGAGACTGAATTCCGGTGTTAACTTCGACGGAGAAGCCACGGGTTCGGGCGAGAAAGTTGTAGAAGAACGAGAAATGGAAGAAGAAGAAGAGCCGGTTATTGAAGGAAGTGAATCAAGCGGTTTAAGACTGTTAGGGCTTCTTCTACAATGCGCTGAATGCGTGGCTATGGATAATCTTCAAGAAGCTAACGATCTCTTACCTGAAATTTCAGAGCTTTCTACACCTTTCGGAACATCCCCTGAGCGCGTCGGCGCGTACTTCGCTCACGCGCTTCAAGCTCGAGTGATAAGTTCATGTTTAGGCACTTACTCGCCTCTAACGATAAGAACACTAAACCAAACTCAATCTCAGAGAATTTTCAACGCTTTACAATCTTACAATTCAATCAGCCCGTTAATCAAATTCTCCCACTTCACGGCCAATCAAACAATCTTCCAAGCCTTGGAAGGTGAAGATCGAGTCCACGTCATTGATCTTGATATAATGCAAGGTCTTCAATGGCCAGGATTGTTCCACATCCTCGCTTCCCGATCAAAAAAAATTCAATCATTGAGAATATCAGGATTCGGATCCTCCTCGGAATTGCTCCAATCAACAGGAAGGAGACTCGCGGATTTCGCCACATCATTAAATCTACCTTTCGAATTCAATCCAGTGGAAGGCAAAATCGGAAACATAAATAATCAAATGGAAATCAGAACAGGGGAAGCGTTGGTGGTTCATTGGATGCATCATTGTTTATACGATATAACGGGGAGTGATTTAGGATTGTTACGATGGTTAACTTCATTGAGACCGAAATTGATTACAATCATTGAACAGGATTTGAGCCACGGAGGTAGTTTTCTAGGGCGGTTCGTGGAGGCCTTGCATTATTACAGCGCGTTGTTTGACGCGCTTGGGGATAGTTTGGGTGTAGATAGTGTAGAGAGGCATGTGGTGGAGCAGCAGTTGTTTGGTTGTGAGATTAGAAACATTATCGCTGTTGGTGGACCCAAACGGACCGGGGAAGTGAAAGTGGAGAGATGGGGTGAAGAACTTAAACGGGTCGGGTTTAGATCCGTTTCTCTTGGAGGAAACCCGGCTGCTCAAGCTAGTTTGTTGCTTGGAATGTTTCCATGGAAAGGCTATACTTTAGTCGAGGAAAATGGGTGCTTGAAATTGGGATGGAAGGATCTCTCTTTGCTTACGGCCTCCGCTTGGCAGCCGTCGGATTCAAAAGCAGGGTAA 1371 45.0 MLRSLLPQSSINSTTTNSSIPMKSSKRPDRELPSTAGDPYPDDPSSKRLNSGVNFDGEATGSGEKVVEEREMEEEEEPVIEGSESSGLRLLGLLLQCAECVAMDNLQEANDLLPEISELSTPFGTSPERVGAYFAHALQARVISSCLGTYSPLTIRTLNQTQSQRIFNALQSYNSISPLIKFSHFTANQTIFQALEGEDRVHVIDLDIMQGLQWPGLFHILASRSKKIQSLRISGFGSSSELLQSTGRRLADFATSLNLPFEFNPVEGKIGNINNQMEIRTGEALVVHWMHHCLYDITGSDLGLLRWLTSLRPKLITIIEQDLSHGGSFLGRFVEALHYYSALFDALGDSLGVDSVERHVVEQQLFGCEIRNIIAVGGPKRTGEVKVERWGEELKRVGFRSVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQPSDSKAG 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 20554156 20555526 + evm.model.ptg000003l.1284 HCH6g0508 546002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0508 456 MobiDBLite consensus disorder prediction 1 83 - -
HCH6g0508 456 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 73 448 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)|GO:0048366(PANTHER)|GO:0090610(PANTHER)
HCH6g0508 456 Pfam GRAS domain family 92 449 IPR005202 -
HCH6g0508 456 MobiDBLite consensus disorder prediction 1 23 - -
HCH6g0508 456 ProSiteProfiles GRAS family profile. 81 449 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH14g0149 HCH-Chr14:24901855 HCH6g0508 HCH-Chr6:20554156 1.40E-32 dispersed
HCH6g0508 HCH-Chr6:20554156 HCH9g0872 HCH-Chr9:6250684 2.60E-131 dispersed
HCH6g0508 HCH-Chr6:20554156 HCH11g0186 HCH-Chr11:1806500 8.10E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33702 PF03514 GRAS 1.90E-113 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0508 K27742 - csv:101212169 716.072