Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0516 ATGGATGGACCAACTGGCCGTGGTGGTAGTGGCATGGATATGAATTTACCAAACTATAAGCTTGGGAAAACCCTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCAGAGCATGCATTAACTGGTCATAAAGTGGCTATTAAGATCCTTAACCGCCGGAAGATAAAGGGTATGGAAATGGAAGAAAAAGTGAGAAGAGAGATTAAAATATTGAGATTGTTTATGCATCCTCACATTATACGACTCTATGAGGTTATAGAGACTCCAGCAGACATTTATGTGGTGATGGAGTACGTGAAATCTGGAGAACTCTTTGATTATATAGTGGAAAAGGGAAGGTTGCAGGAAGATGAGGCTCGTAACTTTTTCCAGCAGATAATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTTCACAGGGATCTGAAGCCAGAGAATTTGCTTTTGGACTCCAAGTGTAATGTGAAGATTGCAGATTTTGGTTTGAGTAATATAATGCGTGATGGTCACTTTCTGAAAACAAGTTGTGGCAGTCCCAATTATGCTGCCCCAGAGGTTATCTCCGGGAAGCTATATGCTGGACCTGAGGTGGACGTGTGGAGTTGTGGCGTTATTTTGTATGCTCTTCTGTGTGGCACTCTTCCTTTTGATGATGAGAATATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTTCCAAGTCATCTATCACCTGGTGCTAGAGAATTGATTCCTAATATGCTTGTTGTTGACCCAATGAAACGCATTACCATACCTGAGATTCGACAACATCCATGGTTCCAGGCTCATCTTCCACGCTATCTAGCCGTGCCTCCACCTGATACAATGCAACAAGCGAAAAAGATTGACGAGGACATTCTCCAGGAAGTTGTGAAAATGGGATTTGACAGAAATCAACTGCTAGAATCTCTTCGTAACCGAATTCAAAATGAGGCTACTGTTGCTTATTATTTGTTACTGGACAACCGGTTCCGCGTCTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGTTTCAACCGCATGCACCCTAGTGATTCCACAGGTCCTGCTGTAGGACACCGTCTTCCTGGATATATGGATTATCAAGGAATGGGCAGATTACAGTTTCCAGTTGAGAGGAAGTGGGCTCTGGGTCTACAGTCTCGAGCTCATCCTCGCGAAATTATGACTGAAGTCCTTAAAGCCCTACGAGAGCTAAATGTGGCTTGGAAGAAGATTGGGCACTATAATATGAAGTGTAGATGGTTACCTGGAATTCCAGGCCATCATGAAGGCATGATTAACAATCCTGCGCATAGTAATCATTACTTCGGGGATGAGTCTGCCATCATTGAAAACGATGGCGTTATAAAATCACCAAACGTAATTAAGTTTGAAGTTCAGCTCTACAAAACACGTGAAGAGAAGTATCTGCTTGATTTGCAGAGAGTTCAAGGCCCACAGTTTCTTTTCCTGGATCTTTGTGCCGCCTTCCTTGCACAGCTCCGGGTCCTTTAA 1545 43.17 MDGPTGRGGSGMDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKGMEMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARELIPNMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLLESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPSDSTGPAVGHRLPGYMDYQGMGRLQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGIPGHHEGMINNPAHSNHYFGDESAIIENDGVIKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 23477724 23490263 + evm.model.ptg000003l.1276 HCH6g0516 546010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0516 514 Gene3D Transferase(Phosphotransferase) domain 1 11 349 - -
HCH6g0516 514 SUPERFAMILY UBA-like 281 330 IPR009060 GO:0005515(InterPro)
HCH6g0516 514 ProSiteProfiles Protein kinase domain profile. 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0516 514 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 465 513 IPR001772 -
HCH6g0516 514 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 292 332 IPR015940 -
HCH6g0516 514 ProSitePatterns Protein kinases ATP-binding region signature. 25 48 IPR017441 GO:0005524(InterPro)
HCH6g0516 514 SMART serkin_6 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0516 514 FunFam Non-specific serine/threonine protein kinase 9 98 - -
HCH6g0516 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0516 514 SMART uba_6 294 331 IPR015940 -
HCH6g0516 514 Pfam Kinase associated domain 1 471 513 IPR001772 -
HCH6g0516 514 Gene3D Kinase associated domain 1, KA1 394 512 - -
HCH6g0516 514 SUPERFAMILY Protein kinase-like (PK-like) 16 288 IPR011009 -
HCH6g0516 514 FunFam Non-specific serine/threonine protein kinase 394 512 - -
HCH6g0516 514 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 18 290 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
HCH6g0516 514 Pfam UBA/TS-N domain 293 329 IPR015940 -
HCH6g0516 514 Pfam Protein kinase domain 19 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0516 514 CDD UBA_SnRK1_plant 293 333 - -
HCH6g0516 514 CDD STKc_AMPK_alpha 16 271 - -
HCH6g0516 514 CDD AMPKA_C 388 511 - -
HCH6g0516 514 SUPERFAMILY KA1-like 328 513 IPR028375 -
HCH6g0516 514 FunFam Non-specific serine/threonine protein kinase 10 349 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0516 HCH-Chr6:23477724 HCH9g0261 HCH-Chr9:1629552 1.10E-221 dispersed
HCH6g0516 HCH-Chr6:23477724 HCH2g1466 HCH-Chr2:56197623 2.00E-74 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81561 PF00069 Pkinase 3.30E-80 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0516 K07198 - csv:101211720 992.645