Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0546 ATGGGCATAATTATGTCGATCGGCCATATTTCTGGCGCTCACTTGAACCCGGCGGTCACCATAGCCTTTGCCGCTTTCCGTCACTTTCCATGGATAGAAGTTCCACTGTACATCGCTGCTCAGATATCAGGTTCTATTTCTGCTGCTTTCACTCTCAAAGCTATCTTTTTTCCCTTCATGTCGGGTGGAGTCACGGTGCCTTCAGTCAGCAACGGTGACGCCTTTGGGCTTGAGTTTATTGTCACATTCATCCTCATGTTTGTCATTGTTGCCGTTGCCACTGATACCAGAGCGGTGGGAGAATTGGCAGGAATAGCAATTGGAGGAATCATAATGCTTAACATTCTGGTGGCCGGACACGCAACTGGTGGTTCCATGAATCCAGTGAGGACCTTAGGCCCAGCCATTGCAGCGGAAAATTACAAAGGTTTATGGATATATATAGTAGCACCCATATTTGGAGCGTTACTTGGTGCAGCTGCCTATGCAGCCGTGAAGCCCCGCCAAGACACGTCAGTGGCACAAGCCAGGAGCTTTGGCCGCGGTCAGGGAGATAGCTTTTCAGCAGTAGTCGAATCGAGCTCAAGTCCAAACTCAGCGTGGAAGCTGCGAGGGAGTTCCTTCTTATGCTTGCCTGGAGATTGCAGGAATGATTGTTCTGAATTGGAGCATTTGAGTGTGATGCTTTGCTACAAGGAAGCTAATGAGGTTGCAGATCTTTTAGCCAGGAAACTACTGCTAGATGAAGGTGTGGCTTTGCCATAA 765 48.76 MGIIMSIGHISGAHLNPAVTIAFAAFRHFPWIEVPLYIAAQISGSISAAFTLKAIFFPFMSGGVTVPSVSNGDAFGLEFIVTFILMFVIVAVATDTRAVGELAGIAIGGIIMLNILVAGHATGGSMNPVRTLGPAIAAENYKGLWIYIVAPIFGALLGAAAYAAVKPRQDTSVAQARSFGRGQGDSFSAVVESSSSPNSAWKLRGSSFLCLPGDCRNDCSELEHLSVMLCYKEANEVADLLARKLLLDEGVALP 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 30740994 30743654 - evm.model.ptg000003l.1246 HCH6g0546 546040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0546 254 ProSitePatterns MIP family signature. 14 22 IPR022357 -
HCH6g0546 254 PANTHER AQUAPORIN NIP2-1 1 168 IPR034294 -
HCH6g0546 254 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0546 254 PRINTS Major intrinsic protein family signature 77 95 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0546 254 PRINTS Major intrinsic protein family signature 145 165 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0546 254 PRINTS Major intrinsic protein family signature 108 130 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH6g0546 254 Gene3D Glycerol uptake facilitator protein. 1 177 IPR023271 -
HCH6g0546 254 SUPERFAMILY Aquaporin-like 3 171 IPR023271 -
HCH6g0546 254 Pfam Major intrinsic protein 4 162 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0285 HCH-Chr6:3991730 HCH6g0546 HCH-Chr6:30740994 9.30E-61 dispersed
HCH6g0546 HCH-Chr6:30740994 HCH9g0229 HCH-Chr9:1366315 2.90E-47 dispersed
HCH6g0546 HCH-Chr6:30740994 HCH9g0227 HCH-Chr9:1349192 2.70E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0546 K09874 - csv:101212651 232.646