Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0553 ATGGAGGTTGCGAAGAAGAAGTTAATTTGGTTGATTTCAGTTCCAGTTTTGGTTATACTTCTATCGCAAAGATTTTGGGATTCATCTTTGGATTTTAGTCAGGTTTGGAGAACTGTTTCTCAACATGGTTCAAAAAATGAGTTTTCCAAAGACAGAGAGCTTGTGGATGGTCTTCTTGCTCCTGGTTTTGATGAAGAATCTTGCTTAAGCAGATACCAATTGAACTTCTTCCGCAAACCCTCTCTTCACAAACCATCTCCTTATCTTCTCTCAAAGCTTCGTAGCCATGAAGATCTTCACCGCCGTTGCGGTCCCGGTTCCTCTTCTTACAAACAAGCTCTTCAAATTCTCAACTCCGACCAAAACTTCACCTTCTCCGACTGCAAATACGCCGTCATTATTACCCGAGATGGCCTCGGAAACAGGATTCTCGCCATCATTTCCGCTTTCTTCTACGCTCTACTCTCCGACCGCGTCTTGCTTCTCGATCAAGGCAATGGACTCGACCATTTATTCTGCGAGCCTTTTCCTAACAGTTCATGGTTTCTGCCACCGGATTTTCCCCTCCGCCATCAATTCGGTTCGTTTCGACAATCCTTTCCTCATTCTCTCGGAAACTTATTGAGAAATGGAATGCCGGAATCGGAATCGCCACCGTCTTATATGTATCTTCATCTCTCACACGACGCCAGTGATCACGATAGACTCTTTTACTGTGATAGACAGCAAGCTTTTCTCAAGAACGTCCCATGGCTGATCATGGAAACGAATAATTACATAATTCCAGGGTTTTTCTTGATTCCAAGTTTCAGAGAAGAATTAAACAATCTATTTCCAGTGAAAGATACCGTCTTCCATCACTTAAGTCGGTACCTCTTCCATCCTACGAACCATGTTTGGGGACTAATTTCAAGGTCTTACAAACCCTACCTGGCTCGAGCGAACGAGATGATAGGGATTCAAATTCGAGTTTTCGGGTCCGAATCCGGCTCGTTCAAAGACCAAATGAACCAACTCCTAGCTTGCACTCAGAAGAAGAATTTACTTCCGGAAGTAAATTTCGAAAGACCGAACGGCAATGGCGATAGCCGTTCTCGAAGCCAGAAAGTGAAAGTAGTTTTGGTGACGTCTTTGAGTTCTGAGTATTTGGAAAATCTGAAGGAAATGTATTGGGAACATCCGACGGTTAATGGTGACGTGGTGGCGGTCTATCAACCAAGCCATGAAGGGCATCAGAGCTCTGATAAGGAGATGCATAACAGGAAGGCGTTGGCAGAGATGTATCTTTTGAGTTTGAGTGATGTGTTGGTGACCAGTTCTTGGTCGACATTTGGGTATGTGGCTCAAGGTTTGGGAGGTTTGAAGCCATGGATTCTTTACAAGCCGGAGGAGAAAATATTTGGGCCAATGCAATGGTGGTTGAGATTCAAAACCAGAAACCGGACGACGGCGGAGGCGGAGGAGTGGCCGTGCGGTCAGGCGGTGTCGATGGAGCCTTGTTTCCATACTCCGCCGGTGTGTGATTGCATTGGGATGAATAGAAGTGATGGAGGGAATGTTTTACCGTTTGTGAGACACTGTGAGGATGCTAGTTGGGGTCTCAAATTGGTTGATAGTAATTAA 1623 45.04 MEVAKKKLIWLISVPVLVILLSQRFWDSSLDFSQVWRTVSQHGSKNEFSKDRELVDGLLAPGFDEESCLSRYQLNFFRKPSLHKPSPYLLSKLRSHEDLHRRCGPGSSSYKQALQILNSDQNFTFSDCKYAVIITRDGLGNRILAIISAFFYALLSDRVLLLDQGNGLDHLFCEPFPNSSWFLPPDFPLRHQFGSFRQSFPHSLGNLLRNGMPESESPPSYMYLHLSHDASDHDRLFYCDRQQAFLKNVPWLIMETNNYIIPGFFLIPSFREELNNLFPVKDTVFHHLSRYLFHPTNHVWGLISRSYKPYLARANEMIGIQIRVFGSESGSFKDQMNQLLACTQKKNLLPEVNFERPNGNGDSRSRSQKVKVVLVTSLSSEYLENLKEMYWEHPTVNGDVVAVYQPSHEGHQSSDKEMHNRKALAEMYLLSLSDVLVTSSWSTFGYVAQGLGGLKPWILYKPEEKIFGPMQWWLRFKTRNRTTAEAEEWPCGQAVSMEPCFHTPPVCDCIGMNRSDGGNVLPFVRHCEDASWGLKLVDSN 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 31261761 31264271 + evm.model.ptg000003l.1239 HCH6g0553 546047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0553 540 Gene3D - 125 182 - -
HCH6g0553 540 Pfam Xyloglucan fucosyltransferase 30 509 IPR004938 GO:0008107(InterPro)|GO:0016020(InterPro)|GO:0042546(InterPro)
HCH6g0553 540 FunFam Galactoside 2-alpha-L-fucosyltransferase 126 177 - -
HCH6g0553 540 Gene3D - 304 464 - -
HCH6g0553 540 PANTHER FUCOSYLTRANSFERASE 2-RELATED 28 539 IPR004938 GO:0005794(PANTHER)|GO:0008107(InterPro)|GO:0008417(PANTHER)|GO:0009969(PANTHER)|GO:0016020(InterPro)|GO:0042546(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0077 HCH-Chr3:445407 HCH6g0553 HCH-Chr6:31261761 2.60E-155 dispersed
HCH6g0553 HCH-Chr6:31261761 HCH1g0906 HCH-Chr1:57481918 4.80E-164 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0553 K13681 - csv:101222105 730.324