Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0575 ATGACTTGCTTCCCTTTTTTGTTCAGTAGGAGACTAAACCCTCCAGCAAGAAATTTTGAGGAGGATGAAGATCTTTCAGGCATTCCCAATGTTAAATTTTACACATACAAAGAGCTAAAAACTGCGACCGAAGATTTCAGCGTGGCTAATAAAATAGGGGAGGGTGGTTTTGGTTCTGTCTACAAGGGAAAGCTAAAAGATGGAAAGATTGCAGCCATAAAAGTTCTGTCAGCTGAATCAAGGCAAGGATTGAAGGAATTCTTAACAGAAATTAATGTCATCTCAGTGATAGAACATGAAAATTTGGTTCAGCTCTATGGCTGCTGTGTGGAAGATAATCATAGAATACTTGTCTACAACTACCTTGAAAACAATAGCCTTGCACAAACCCTTCTTGGGCGAGGTTACAGTAGCATCCAGTTTAATTGGCAAACGAGGTCTAATATTTGCATTGGGATTGCACGCGGGCTTGCGTTTCTTCATGAGGATGTACAACCACATATCATTCATAGAGATATCAAAGCAAGCAACATTCTCCTTGATGAAGACCTGGCTCCTAAAATTTCAGATTTTGGTCTAGCAAAGCTTATTCCAGCCAGCATGACTCACGTTAGTACCCGAGTGGCAGGAACAATTGGTTACCTGGCACCAGAATATGCAATAAGAGGGCAAGTGACAAGAAAATCAGATATATACAGTTTTGGCGTCCTCCTTGTGGAAATAGTCAGTGGAAGATGGAACACAAATACACAATTACCAGTTGGAGACCAGTATCTTCTTGAAAGGACTTGGAATCTCTATGAACGGAATGAGCTTGTTGAGCTGGTAGATACATCATTGAACGGTGATTTTGATGCTGAGGAGGCTTGTAAATATCTGAAGATTGGTCTACTTTGCACCCAAGACAGTCCAAAGCTCCGTCCATCCATGTCAACGGTCGTCAAGATGCTAACTGGGCAGATCAATATCAACGATAGAACGATAACAAAACCAGGGTTAATTTCCGACTTCATGGATCTAAAGGTAAAGAATCCCGGAAAAAGTCCAGGCAATGGAGCGGTGTCTTCTGACAGTCTTTCATCAGGATCAAACAACCTTGGTGGCTCAACAATGTCATCTGGAACCTCAACTGTTACAACTGCAACCTTCACTGCACAATATGATAGGAGTACTTTCTCATCAATATGA 1188 41.41 MTCFPFLFSRRLNPPARNFEEDEDLSGIPNVKFYTYKELKTATEDFSVANKIGEGGFGSVYKGKLKDGKIAAIKVLSAESRQGLKEFLTEINVISVIEHENLVQLYGCCVEDNHRILVYNYLENNSLAQTLLGRGYSSIQFNWQTRSNICIGIARGLAFLHEDVQPHIIHRDIKASNILLDEDLAPKISDFGLAKLIPASMTHVSTRVAGTIGYLAPEYAIRGQVTRKSDIYSFGVLLVEIVSGRWNTNTQLPVGDQYLLERTWNLYERNELVELVDTSLNGDFDAEEACKYLKIGLLCTQDSPKLRPSMSTVVKMLTGQININDRTITKPGLISDFMDLKVKNPGKSPGNGAVSSDSLSSGSNNLGGSTMSSGTSTVTTATFTAQYDRSTFSSI 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 33799439 33802501 + evm.model.ptg000003l.1217 HCH6g0575 546069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0575 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0575 395 MobiDBLite consensus disorder prediction 345 375 - -
HCH6g0575 395 Gene3D Transferase(Phosphotransferase) domain 1 122 330 - -
HCH6g0575 395 Pfam Protein kinase domain 47 314 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0575 395 SUPERFAMILY Protein kinase-like (PK-like) 25 317 IPR011009 -
HCH6g0575 395 Gene3D Phosphorylase Kinase; domain 1 17 121 - -
HCH6g0575 395 MobiDBLite consensus disorder prediction 349 375 - -
HCH6g0575 395 FunFam cold-responsive protein kinase 1 122 333 - -
HCH6g0575 395 CDD STKc_IRAK 52 319 - -
HCH6g0575 395 ProSiteProfiles Protein kinase domain profile. 46 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0575 395 SMART serkin_6 46 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0575 395 FunFam cold-responsive protein kinase 1 17 121 - -
HCH6g0575 395 ProSitePatterns Protein kinases ATP-binding region signature. 52 74 IPR017441 GO:0005524(InterPro)
HCH6g0575 395 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 30 350 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0635 HCH-Chr3:4419389 HCH6g0575 HCH-Chr6:33799439 2.50E-95 dispersed
HCH6g0575 HCH-Chr6:33799439 HCH9g0595 HCH-Chr9:4001087 3.80E-102 dispersed
HCH6g0575 HCH-Chr6:33799439 HCH6g0639 HCH-Chr6:38236753 7.80E-140 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81562 PF00069 Pkinase 4.80E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0575 - - - 0.0