Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0583 ATGGAAGACGAATCCATATTTCCACCCGATACAGATCTCGATTTCAGCTTCACTAGCTGCACTTCAGCCACCACTGACCGTACTTTCACATCTTCCAGTGCCCGTACTAGCTTAGCAAGATCCAGTGTAACTCTCAGCTTCAATGAATCCCGTCTCTCCACTCCCACCACCACCATCACCACTTCCTCCTCCCTCAATCTCCGCCCCCACCGCCAATCCGACCCCCATTGGTCTGCCATCAAAGCCGCCACCAACCTCTCCTCGGACGGAAAACTTCATCTCCGCCACCTCAAACTTATTCGCCACCTCGGTACTGGAAACTTAGGCCGTGTATTTCTCTGCCATTTGAGAGATAATGATCATACTAATTTTGCTCTTAAAGTCGTTGATAAGGAAGCGTTGAGTAATAAAAAACTTTCCCATGTTCAAATGGAGGCGGAGATTCTCTCCATGCTTGACCACCCTTTTCTTCCTACGTTGTACGGACACCTTGAGGTGTCTCATTATACTTGTCTTTTGATTGATTACTGTCCTGGCGGAGATCTCCATTCTCTCCTTCGTAAACAGCCTGGGAATCGACTACCTATTCAAGCTGTTAGATTCTTCGCCGCTGAGGTCCTTGTCGCACTTGAATATTTACATGCGCTTGGCGTCGTGTATCGTGATTTGAAACCTGAAAACGTGCTTCTAAGAGAAGATGGACATGTTATGTTGTCTGATTTTGACTTGTGCTTTAAAGCTGATGTGGTCCCCACTTTTCAGACACGGTCACGGGACACGGCTGATGGAGATCTCTGCCGCATCCGCCGCAGCTATTTCAGCTGTTTCGGCTCTTCGACGAGAGAAAGTAAAGAGGATGAGGATTTGGTGGCGGAGTTCGTGGCCGAGCCGACGAAGGCGTTTTCGAAGTCGTGCGTTGGAACTCATGAGTATCTGGCGCCGGAGATTGTTTCCGGCAGCGGACACGGCAACGGCGTTGATTGGTGGGCGTTTGGTGTATTCATTTATGAATTGCTTTACGGGACGACGCCGTTTAAGGGAGGGAACAAAGAGGGTACGCTTAGAAACATAGCGTCGACGAAGGGGTTAAAGTTTGATGGGGCGGTGGACGGCGGCGAAGAACAGGGGATGGCGGAGGCGCGTGATTTGATAGAGCGGTTGTTGGAAAAGGATCCGAGGAGAAGGTTGGGATCTGGAAAAGGGGCGACGGATATCAAACGGCATCCGTTCTTCGACGGGATTAAGTGGCCGTTGATCCGTACGTATCGGCCTCCGGAGGTACGTGGGCTAGTGAGAAAAGCTAGATCGCACGTGAGTCATGTGACTGCCGTCGCCCAACACAAGCGGCGGCCCGGGTGGTGGAACTGGAAGAAGCTTAGCCACCTAATACCTGTAATGACAAATCGAAAGTCCAGTAAAAATTATACCAACAGTAATTATTATAATTATAACTCCAAAAATAATAAGTTGGGTTAA 1476 49.39 MEDESIFPPDTDLDFSFTSCTSATTDRTFTSSSARTSLARSSVTLSFNESRLSTPTTTITTSSSLNLRPHRQSDPHWSAIKAATNLSSDGKLHLRHLKLIRHLGTGNLGRVFLCHLRDNDHTNFALKVVDKEALSNKKLSHVQMEAEILSMLDHPFLPTLYGHLEVSHYTCLLIDYCPGGDLHSLLRKQPGNRLPIQAVRFFAAEVLVALEYLHALGVVYRDLKPENVLLREDGHVMLSDFDLCFKADVVPTFQTRSRDTADGDLCRIRRSYFSCFGSSTRESKEDEDLVAEFVAEPTKAFSKSCVGTHEYLAPEIVSGSGHGNGVDWWAFGVFIYELLYGTTPFKGGNKEGTLRNIASTKGLKFDGAVDGGEEQGMAEARDLIERLLEKDPRRRLGSGKGATDIKRHPFFDGIKWPLIRTYRPPEVRGLVRKARSHVSHVTAVAQHKRRPGWWNWKKLSHLIPVMTNRKSSKNYTNSNYYNYNSKNNKLG 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 34566752 34568227 + evm.model.ptg000003l.1209 HCH6g0583 546077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0583 491 SUPERFAMILY Protein kinase-like (PK-like) 73 439 IPR011009 -
HCH6g0583 491 CDD STKc_phototropin_like 95 427 - -
HCH6g0583 491 FunFam Serine/threonine-protein kinase OXI1 300 429 - -
HCH6g0583 491 Gene3D Transferase(Phosphotransferase) domain 1 302 426 - -
HCH6g0583 491 Gene3D Phosphorylase Kinase; domain 1 96 180 - -
HCH6g0583 491 SMART serkin_6 97 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0583 491 ProSiteProfiles Protein kinase domain profile. 97 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0583 491 Gene3D Transferase(Phosphotransferase) domain 1 181 248 - -
HCH6g0583 491 PANTHER FLIPPASE KINASE 1-RELATED 33 433 - GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH6g0583 491 Pfam Protein kinase domain 297 411 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0583 491 Pfam Protein kinase domain 99 246 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0583 491 FunFam Serine/threonine-protein kinase WAG2 181 247 - -
HCH6g0583 491 FunFam Serine/Threonine Kinase 95 181 - -
HCH6g0583 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0583 HCH-Chr6:34566752 HCH6g0968 HCH-Chr6:44503937 1.00E-96 dispersed
HCH6g0583 HCH-Chr6:34566752 HCH3g1038 HCH-Chr3:14475731 1.90E-95 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81563 PF00069 Pkinase 9.60E-35 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0583 - - - 0.0