Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0615 ATGCCTCCTCAAGATCATTCAAAGAAGGAGACCAGAGAGATCAACTTTTTCACTGAATATGGGGATGCTAATAGGTATAAGATTCTAGAAGTTATCGGGAAGGGAAGTTATGGAGTTGTTTGTGCCGCTATTGACATGCAAAGTGGCGCAAAAGTTGCAATAAAGAAAATCCATGACATTTTTGATCACATATCAGATGCTATTCGAATCCTTCGTGAAGTTAAGCTACTTCGGCTGTTACGGCATCCTGATATTGTTGAAATTAAGCACATCATGTTACCACCATCAAAGAGGGAATTTAAGGACATTTATGTAGTTTTTGAGCTTATGGAATCTGATCTTCATCAGGTCATTAAAGCTAATGATGACTTGACTCGTGAGCATCATCAGTTTTTTCTTTATCAGATGCTACGTGCACTGAAATTCATGCATACAGCCAATGTGTATCATAGAGATCTGAAGCCAAAGAATATTTTGGCAAATGCCAATTGCAAGCTTAAAGTTTGCGATTTTGGACTTGCAAGGGTTGCTTTTAGTGATACACCAACTACAATATTTTGGACAGACTACGTTGCTACTAGATGGTACAGAGCTCCGGAGCTGTGTGGATCATTTTTTTCCAAGTATACTCCTGCAATAGATATTTGGAGCATCGGCTGCATATTTGCTGAGGTGTGGACAGGGAAGCCACTGTTTCCTGGTAAAAGTGTTTCCCATCAATTAGATTTGATAACTGATCTCCTTGGAACTCCGTCATTGGAAACCATTGCAGGAGTTCGGAATGAAAAGGCTAGGAAATTCTTGACTGATATGAGGAAGAAATCTGCAGTGCCATTTTCGCAAAGATTTCCCAATGCAGATCCTTTAGCCATCGGCTTATTACAAAGGCTATTAGCATTTGATCCAAAGGATCGGCCATCAGCTGAGGAGGCACTGGCTGATCCTTACTTTAAGGGCCTAGCAAAGGTTGAAAGAGAGCCTTCTTGTCAGCCAATCTCCAAATTGGAGTTTGAGTTTGAGAGGAGAAGGTTGATGAAGGAGGATATAAGGGAATTACTGTACCGGGAGATATTAGAGTACCATCCTCAGCTTCGTAAAGACTATATGAACGGAACAGAGGGTGCAAATTTCGTATATCCTAGTGCTATAGGTCAATTCAGGAAACAGTTTGCCTACTATGAGGAGAAGAGTGGTAAAAGTTCACCTGTTATGCCTCTGGAACGGAAGCACTTTTCCCTCCCACGGTCCACTGTCTGCTCAAGTTTAGTTTCTCCCAACCACAAGCCAGTTATGGCTTCATGTGAGAATCGACGTGGTTCTGAGGCCTCAAATGATGTTAGATTACCTGATGCAAAATCTGGGAATCCATCAAAGGCATTACATCCTCCACCTAAAGTGCCAATTGCAAAACCAGGAAGAGTTGTTGGGCCAGCCCCCCCATATGAGAACAACAGGAGCATGAAAGATTATTACGATCCGAGGATTCTTCACCGAAATGCAATTTTCTCTCCGCCAGTCGTCTCTCCACACTGTTTGTTCAGGACTCACGTGAATCAGAGGACTGGATCTGTGAATGAGAAGGATCCTTCTCAATCCAAACCCCAATCTCAGAACTTACAGCATCATAGTGTGAGATCCATCTCTAATACTAACCAATATTACCCAACACAAGCTAATGTAGATCCAAATCCCTTGAATGATCGAATAACCATTGAAGAGAAGCTGCTGCAGGCACAATCTCAGTTTGGTGCTGCCGGAGTGGCGGCCATTGCCATTGCTGCTCACCGGAGTGCCGAGTAG 1800 42.78 MPPQDHSKKETREINFFTEYGDANRYKILEVIGKGSYGVVCAAIDMQSGAKVAIKKIHDIFDHISDAIRILREVKLLRLLRHPDIVEIKHIMLPPSKREFKDIYVVFELMESDLHQVIKANDDLTREHHQFFLYQMLRALKFMHTANVYHRDLKPKNILANANCKLKVCDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVWTGKPLFPGKSVSHQLDLITDLLGTPSLETIAGVRNEKARKFLTDMRKKSAVPFSQRFPNADPLAIGLLQRLLAFDPKDRPSAEEALADPYFKGLAKVEREPSCQPISKLEFEFERRRLMKEDIRELLYREILEYHPQLRKDYMNGTEGANFVYPSAIGQFRKQFAYYEEKSGKSSPVMPLERKHFSLPRSTVCSSLVSPNHKPVMASCENRRGSEASNDVRLPDAKSGNPSKALHPPPKVPIAKPGRVVGPAPPYENNRSMKDYYDPRILHRNAIFSPPVVSPHCLFRTHVNQRTGSVNEKDPSQSKPQSQNLQHHSVRSISNTNQYYPTQANVDPNPLNDRITIEEKLLQAQSQFGAAGVAAIAIAAHRSAE 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 36974428 36979322 + evm.model.ptg000003l.1177 HCH6g0615 546109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0615 599 ProSitePatterns MAP kinase signature. 61 164 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0615 599 CDD STKc_TDY_MAPK 25 362 - -
HCH6g0615 599 SUPERFAMILY Protein kinase-like (PK-like) 21 321 IPR011009 -
HCH6g0615 599 ProSiteProfiles Protein kinase domain profile. 26 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0615 599 MobiDBLite consensus disorder prediction 460 474 - -
HCH6g0615 599 Pfam Protein kinase domain 26 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0615 599 ProSitePatterns Protein kinases ATP-binding region signature. 32 56 IPR017441 GO:0005524(InterPro)
HCH6g0615 599 SMART serkin_6 26 317 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0615 599 FunFam Mitogen-activated protein kinase 112 340 - -
HCH6g0615 599 MobiDBLite consensus disorder prediction 520 544 - -
HCH6g0615 599 Gene3D Transferase(Phosphotransferase) domain 1 112 340 - -
HCH6g0615 599 Gene3D Phosphorylase Kinase; domain 1 41 363 - -
HCH6g0615 599 FunFam Mitogen-activated protein kinase 15 120 - -
HCH6g0615 599 MobiDBLite consensus disorder prediction 429 481 - -
HCH6g0615 599 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 23 358 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0615 HCH-Chr6:36974428 HCH7g0055 HCH-Chr7:379128 8.30E-218 dispersed
HCH6g0615 HCH-Chr6:36974428 HCH2g0905 HCH-Chr2:52532151 3.40E-219 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81564 PF00069 Pkinase 4.40E-63 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0615 - - - 0.0