Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0619 ATGAAGATTCAGTGCAATGTGTGTGAAATAGCGGAAGCAAACGTCTTATGTTGTGCAGATGAGGCAGCCTTGTGTTGGGATTGCGATGAGAAGATTCACGCTGCAAATAAGTTAGCCAGTAAACACCAGAGGGTTCCTCTTACTGGCTCTTCTTCTCAGATCCCCAAATGTGATATTTGCCAGGAATCAAGTGGCTACATCTTCTGTCTGGAGGATCGAGCATTATTTTGCAGGAAATGTGATGTTGCTATACACAAGGCAAATACTTATGTATCCGGTCACCAGCGATTTCTGCTTACTGGTGTGAAAGTGGGACTTGAACCCACTGAACCTGCTGCATGTTCATCAATGCCTAGAGAACAATCTAGAGAGAAATCTACTGAAACAAGAAATAGTTTATTCTCTGGAAGGGAGTTCTCCATGCCTTCTTCTGGTGAACTCAACAAAACCTTACCCATACAAAGTGAGTCTGCGGACTTGGTGCCAAATAAAGTGTTGTTTAATGAAGATTCTGTTTCTGGTGGCTTTCCTCAATGGCATATGGATGAATTTATGAATCTGACAGCATTCAACCAGAATTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCACCAGTTTTGAGAGCTGCTGAGGTAGAACTGGATGATGATGAGTGCTTGGGTCAGGTTCCAGAGGCGTCCTGGACTGTGCCTCAGATTCCCTCCCCGCCTACAGCATCCGGCTTATACTGGCCAAGAAGCTATCACAATTCTACGGATGGTGCTGTTTTTGTTCCTGACATCTCTTTCGAACATTGCTCACATAACGGTACATTTTTGAAAAGGCGTAGACGGTTCTAG 870 44.02 MKIQCNVCEIAEANVLCCADEAALCWDCDEKIHAANKLASKHQRVPLTGSSSQIPKCDICQESSGYIFCLEDRALFCRKCDVAIHKANTYVSGHQRFLLTGVKVGLEPTEPAACSSMPREQSREKSTETRNSLFSGREFSMPSSGELNKTLPIQSESADLVPNKVLFNEDSVSGGFPQWHMDEFMNLTAFNQNYGYMDNGSSKADSGKLGDSDSPVLRAAEVELDDDECLGQVPEASWTVPQIPSPPTASGLYWPRSYHNSTDGAVFVPDISFEHCSHNGTFLKRRRRF 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37204411 37211238 + evm.model.ptg000003l.1173 HCH6g0619 546113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0619 289 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH6g0619 289 MobiDBLite consensus disorder prediction 110 145 - -
HCH6g0619 289 Gene3D Classic Zinc Finger 1 93 - -
HCH6g0619 289 CDD Bbox1_BBX-like 56 99 IPR049808 -
HCH6g0619 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 273 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH6g0619 289 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 FunFam B-box zinc finger protein 22 1 93 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0619 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0050 HCH-Chr10:432060 HCH6g0619 HCH-Chr6:37204411 3.50E-34 dispersed
HCH6g0619 HCH-Chr6:37204411 HCH8g1002 HCH-Chr8:46108337 1.50E-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1527 . 5 392 Orphan Transcription Factor Family AT5G61850 66.1 1.4e-123 439.9
HCH10g0050 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 8.6e-62 233.4
HCH6g0619 . 1 109 Orphan Transcription Factor Family AT1G06040 65.1 5.6e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33708 PF00643 zf-B_box 7.80E-07 No_clan HCH TR