Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH6g0619 | ATGAAGATTCAGTGCAATGTGTGTGAAATAGCGGAAGCAAACGTCTTATGTTGTGCAGATGAGGCAGCCTTGTGTTGGGATTGCGATGAGAAGATTCACGCTGCAAATAAGTTAGCCAGTAAACACCAGAGGGTTCCTCTTACTGGCTCTTCTTCTCAGATCCCCAAATGTGATATTTGCCAGGAATCAAGTGGCTACATCTTCTGTCTGGAGGATCGAGCATTATTTTGCAGGAAATGTGATGTTGCTATACACAAGGCAAATACTTATGTATCCGGTCACCAGCGATTTCTGCTTACTGGTGTGAAAGTGGGACTTGAACCCACTGAACCTGCTGCATGTTCATCAATGCCTAGAGAACAATCTAGAGAGAAATCTACTGAAACAAGAAATAGTTTATTCTCTGGAAGGGAGTTCTCCATGCCTTCTTCTGGTGAACTCAACAAAACCTTACCCATACAAAGTGAGTCTGCGGACTTGGTGCCAAATAAAGTGTTGTTTAATGAAGATTCTGTTTCTGGTGGCTTTCCTCAATGGCATATGGATGAATTTATGAATCTGACAGCATTCAACCAGAATTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCACCAGTTTTGAGAGCTGCTGAGGTAGAACTGGATGATGATGAGTGCTTGGGTCAGGTTCCAGAGGCGTCCTGGACTGTGCCTCAGATTCCCTCCCCGCCTACAGCATCCGGCTTATACTGGCCAAGAAGCTATCACAATTCTACGGATGGTGCTGTTTTTGTTCCTGACATCTCTTTCGAACATTGCTCACATAACGGTACATTTTTGAAAAGGCGTAGACGGTTCTAG | 870 | 44.02 | MKIQCNVCEIAEANVLCCADEAALCWDCDEKIHAANKLASKHQRVPLTGSSSQIPKCDICQESSGYIFCLEDRALFCRKCDVAIHKANTYVSGHQRFLLTGVKVGLEPTEPAACSSMPREQSREKSTETRNSLFSGREFSMPSSGELNKTLPIQSESADLVPNKVLFNEDSVSGGFPQWHMDEFMNLTAFNQNYGYMDNGSSKADSGKLGDSDSPVLRAAEVELDDDECLGQVPEASWTVPQIPSPPTASGLYWPRSYHNSTDGAVFVPDISFEHCSHNGTFLKRRRRF | 289 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 37204411 | 37211238 | + | evm.model.ptg000003l.1173 | HCH6g0619 | 546113 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH6g0619 | 289 | CDD | Bbox1_BBX-like | 5 | 47 | IPR049808 | - | |
HCH6g0619 | 289 | MobiDBLite | consensus disorder prediction | 110 | 145 | - | - | |
HCH6g0619 | 289 | Gene3D | Classic Zinc Finger | 1 | 93 | - | - | |
HCH6g0619 | 289 | CDD | Bbox1_BBX-like | 56 | 99 | IPR049808 | - | |
HCH6g0619 | 289 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270(InterPro) | |
HCH6g0619 | 289 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 273 | IPR051979 | GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER) | |
HCH6g0619 | 289 | SMART | bboxneu5 | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
HCH6g0619 | 289 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270(InterPro) | |
HCH6g0619 | 289 | Pfam | B-box zinc finger | 54 | 96 | IPR000315 | GO:0008270(InterPro) | |
HCH6g0619 | 289 | ProSiteProfiles | Zinc finger B-box type profile. | 52 | 99 | IPR000315 | GO:0008270(InterPro) | |
HCH6g0619 | 289 | FunFam | B-box zinc finger protein 22 | 1 | 93 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0050 | HCH-Chr10:432060 | HCH6g0619 | HCH-Chr6:37204411 | 3.50E-34 | dispersed | |
HCH6g0619 | HCH-Chr6:37204411 | HCH8g1002 | HCH-Chr8:46108337 | 1.50E-07 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
33708 | PF00643 | zf-B_box | 7.80E-07 | No_clan | HCH | TR |
Pathway information
