Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0619 ATGAAGATTCAGTGCAATGTGTGTGAAATAGCGGAAGCAAACGTCTTATGTTGTGCAGATGAGGCAGCCTTGTGTTGGGATTGCGATGAGAAGATTCACGCTGCAAATAAGTTAGCCAGTAAACACCAGAGGGTTCCTCTTACTGGCTCTTCTTCTCAGATCCCCAAATGTGATATTTGCCAGGAATCAAGTGGCTACATCTTCTGTCTGGAGGATCGAGCATTATTTTGCAGGAAATGTGATGTTGCTATACACAAGGCAAATACTTATGTATCCGGTCACCAGCGATTTCTGCTTACTGGTGTGAAAGTGGGACTTGAACCCACTGAACCTGCTGCATGTTCATCAATGCCTAGAGAACAATCTAGAGAGAAATCTACTGAAACAAGAAATAGTTTATTCTCTGGAAGGGAGTTCTCCATGCCTTCTTCTGGTGAACTCAACAAAACCTTACCCATACAAAGTGAGTCTGCGGACTTGGTGCCAAATAAAGTGTTGTTTAATGAAGATTCTGTTTCTGGTGGCTTTCCTCAATGGCATATGGATGAATTTATGAATCTGACAGCATTCAACCAGAATTATGGGTATATGGATAATGGATCATCCAAGGCTGATAGTGGTAAGCTTGGGGATTCTGATTCACCAGTTTTGAGAGCTGCTGAGGTAGAACTGGATGATGATGAGTGCTTGGGTCAGGTTCCAGAGGCGTCCTGGACTGTGCCTCAGATTCCCTCCCCGCCTACAGCATCCGGCTTATACTGGCCAAGAAGCTATCACAATTCTACGGATGGTGCTGTTTTTGTTCCTGACATCTCTTTCGAACATTGCTCACATAACGGTACATTTTTGAAAAGGCGTAGACGGTTCTAG 870 44.02 MKIQCNVCEIAEANVLCCADEAALCWDCDEKIHAANKLASKHQRVPLTGSSSQIPKCDICQESSGYIFCLEDRALFCRKCDVAIHKANTYVSGHQRFLLTGVKVGLEPTEPAACSSMPREQSREKSTETRNSLFSGREFSMPSSGELNKTLPIQSESADLVPNKVLFNEDSVSGGFPQWHMDEFMNLTAFNQNYGYMDNGSSKADSGKLGDSDSPVLRAAEVELDDDECLGQVPEASWTVPQIPSPPTASGLYWPRSYHNSTDGAVFVPDISFEHCSHNGTFLKRRRRF 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37204411 37211238 + evm.model.ptg000003l.1173 HCH6g0619 546113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0619 289 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH6g0619 289 MobiDBLite consensus disorder prediction 110 145 - -
HCH6g0619 289 Gene3D Classic Zinc Finger 1 93 - -
HCH6g0619 289 CDD Bbox1_BBX-like 56 99 IPR049808 -
HCH6g0619 289 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 273 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH6g0619 289 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
HCH6g0619 289 FunFam B-box zinc finger protein 22 1 93 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0050 HCH-Chr10:432060 HCH6g0619 HCH-Chr6:37204411 3.50E-34 dispersed
HCH6g0619 HCH-Chr6:37204411 HCH8g1002 HCH-Chr8:46108337 1.50E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33708 PF00643 zf-B_box 7.80E-07 No_clan HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0619 - - - 0.0