Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0622 ATGGGTCTTCTGATTTCTGAATCTACAATTCTTACTCTCCTTCTTTTGGGGTTTTTGGTATTCAATGGCTTCGAAGATTTTGGATCCGACGCTCAACTTTTGCCCCAACAAGAAGTGAAATCCCTTCAAACAATATCTTCAAAATTAAAGAATTTAAGTTGGAATGTTACACGGAGCTCTTGCATTCAAGGTGAAGGCTTTTTCAATGGAGTTTTTCCGGGAAACCAAATCCTGAGAAATGTCTCATGCAATTGTTCTTCCACTCTTTGTCATGTTACAATCATCTTACTGAAGGGTCTCAATCTAACGGGAACTTTTCCTGCTGAATTTGGTAATCTTACTCATCTGCAGGAGCTTGATCTTACTCGCAACTATGTCAATGGTCCAATACCAACAAGTTTGTCCAGTGTTCCTCTTGTCAAACTTGCTCTCTTGGGAAACAGGCTAAGTGGTTCAATTCCGAGGGAAATTGGTGACATTGGTACTCTTGAAGAGCTGGTCTTGGAAAACAATCAGCTAACTGGAAATCTACCTGACAACCTTGGAAATCTGAGCAGCTTGAGTAGACTACTTCTTTCTGCAAACAATTTCACGGGAACGATTCCAGAGTCATTTGGAAAATTAAAGAACTTGTTTGATTTTCGGATTGATGGGAATGGATTTTCAGGGAAGATACCCGGATTCATTGGGAATTGGAGTAAGCTTGACAGACTGGATATTCAAGGAACATCGATGGAGAACCCCATTCCTTCTACAATATCTCTACTTAAAAATCTAACTCAATTGAGGATATCTGATTTGAAGGGCTCAGTTATAAGCTTCCCCAATTTGACGGATATGATAAATATGGAAGAATTGGTCCTGAGGAACTGTTTAATTAATGGTCCAATCCCAGAGTATATTGGACAAATGAATAAATTATCAACTCTAGATCTAAGCTTCAACCATTTAACTGGTCCAATTCCTGGGACATTTCAGAATCTGGTGAAGAAAAAAATAGACTTCTTGTTTCTTACTAACAACTCACTGAGTGGTGAAGTGCCAAGTTGGATCTTGAACAGCAAGAAAAACGTAGATTTGTCTTACAACAATTTTTCAGGGTCTACTCTTACCAGTTGCCAACAATCACTTGTGAACTTGGCAGCCAGTTATGCACCTGCAGCAAACCAGCAAACTCCTTGGTGCCTCAAGAAGGACCTTCCATGCTCAGGAAAAGCTGAACATTATTCCTTGTTTATTAATTGTGGGGGAACCAAATTGAACATTGATGGGAATGATTATGAAGAGGACTTGACAACCGAAGGCAAGTCAAACTTCTTTTCTGTGTCAGAAAAATGGGCATATAGCAGTACAGGAGTTTATTTGGGTGATGAAAGTGCTGATTACATAGCTTCAAATAAGTTGGCCCTGAATGTCAGTGGTCCACGCTATTATGAAAATGCCCGACTTTCCCCTCTCTCCCTCAAATATTACGGTCTTTGCTTGCGGAAGGGAAGTTACAATGTGAAGCTCCACTTCGCCGAAATTATGTACTCTAATGACCAAACTTTTAGTAGCCTGGGAAAGCGTATTTTTGATATATCAATTCAAGGACATTTAATTAAGAAGGATTTCAATATTGCGGAGGCAGCTGGAGGTGTTGGCAAGAACTTCACAGTGGAAGATAAAAATGTTCTCGTCAATGGCAGTACTCTTGAGATCCACTTATATTGGGCTGGAAAAGGAACTACGGCCGTGCCTGACCGAGGAGTTTATGGGCCCCTTATTTCTGCTATCACAGTAACCCCAAACTTCGAGATTGACAGGGGAGGAGGGCTATCAGATGGAGCACTTGCTGGCATTATAGTTTCTTCATGCGCGGTAGTCATACTATTAGTGGTACTCGTAGTTCTCTGGATGAAAGGTTGCATATGTAAGAAGGACGTCCCAGTGAATGAACTTTCTGGCCTAGATTTACAAACTGGTCATTTTACTTTGAAACAAATCAAAGCAGCCACCAACAACTTTGATCCTAAATATAAGATAGGGGAAGGTGGATTTGGGCCCGTGTACAAGGGAGTATTGTCAGATGGTGTTTTAATTGCTGTGAAGCAACTTTCCTCGAAATCTAAGCAGGGGAACCGTGAATTTGTTACTGAGATTGGCATGATATCTGCATTGCAACATCCAAATCTTGTTAAACTCTATGGCTGCTGTGTTGAAGGAAACCAATTGTTGCTTATATATGAGTACCTGGAAAACAATAGTCTTGCTCGTGCACTTTTTGGTCGTGAGGAACAGAAGCTACATCTGGACTGGCCAACAAGGAAGAAGATATGCTCGGAAATAGCTCGGGGTTTATTTTACCTTCATGAAGAATCAAGGTTGAAAATTGTTCATAGAGACATAAAGGCTACTAATGTGCTACTGGATAAAGATCTCAATGCCAAGATTTCTGATTTTGGTTTGGCTAAGCTTGATGAAGAGGAGAACACCCACATAAGCACACGAATTGCTGGAACTATTGGTTATATGGCTCCAGAGTATGCGATGAGAGGGTACTTGACTGACAAAGCAGATGTTTATAGCTTTGGAATTGTTGCGTTGGAGATAGTCAGTGGAAAAAGTAACACAAATTACAGGCCAAAGGAGGAGTTTGTCTATCTTCTTGATTGGGCTTATGTCCTGGAAGAGCAGGGAAACCTTCTAGAATTAGTAGATCCAGACCTTGGTTCAAACTACTCATCAGAGGAGGCATTGAGGATGCTCAACATAGCTCTCTTATGCACCAATCCATCTCCCACTCTCAGACCAGCTATGTCTTCCGTAGTGAGTATGCTTGAAGGTAAAACTGCAGTCCAAGCACCCATCATCAAGCGCACTTCGTCCGGCCAAATTCCGATGTTTAAAGCCTTTGAGAAGCTCTCACACGATAGCAAATCGCAGTTTTCAAGCACGACAACTTCGCGGGGTGCTCAAGCACAAAAGAGTATGTTAATGGACGGGCCATGTATCGATTCATCGGTATCAGAAGAGAGCAATGTCAACCATCTTGGAAATTCTTCATCAAGCAATCTCCTGGAGAATCATCAACGTATGGAAAATTAG 3087 41.24 MGLLISESTILTLLLLGFLVFNGFEDFGSDAQLLPQQEVKSLQTISSKLKNLSWNVTRSSCIQGEGFFNGVFPGNQILRNVSCNCSSTLCHVTIILLKGLNLTGTFPAEFGNLTHLQELDLTRNYVNGPIPTSLSSVPLVKLALLGNRLSGSIPREIGDIGTLEELVLENNQLTGNLPDNLGNLSSLSRLLLSANNFTGTIPESFGKLKNLFDFRIDGNGFSGKIPGFIGNWSKLDRLDIQGTSMENPIPSTISLLKNLTQLRISDLKGSVISFPNLTDMINMEELVLRNCLINGPIPEYIGQMNKLSTLDLSFNHLTGPIPGTFQNLVKKKIDFLFLTNNSLSGEVPSWILNSKKNVDLSYNNFSGSTLTSCQQSLVNLAASYAPAANQQTPWCLKKDLPCSGKAEHYSLFINCGGTKLNIDGNDYEEDLTTEGKSNFFSVSEKWAYSSTGVYLGDESADYIASNKLALNVSGPRYYENARLSPLSLKYYGLCLRKGSYNVKLHFAEIMYSNDQTFSSLGKRIFDISIQGHLIKKDFNIAEAAGGVGKNFTVEDKNVLVNGSTLEIHLYWAGKGTTAVPDRGVYGPLISAITVTPNFEIDRGGGLSDGALAGIIVSSCAVVILLVVLVVLWMKGCICKKDVPVNELSGLDLQTGHFTLKQIKAATNNFDPKYKIGEGGFGPVYKGVLSDGVLIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCVEGNQLLLIYEYLENNSLARALFGREEQKLHLDWPTRKKICSEIARGLFYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLEEQGNLLELVDPDLGSNYSSEEALRMLNIALLCTNPSPTLRPAMSSVVSMLEGKTAVQAPIIKRTSSGQIPMFKAFEKLSHDSKSQFSSTTTSRGAQAQKSMLMDGPCIDSSVSEESNVNHLGNSSSSNLLENHQRMEN 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37425742 37436967 - evm.model.ptg000003l.1170 HCH6g0622 546116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0622 1028 Pfam Leucine Rich Repeat 186 208 IPR001611 GO:0005515(InterPro)
HCH6g0622 1028 Pfam Leucine Rich Repeat 306 328 IPR001611 GO:0005515(InterPro)
HCH6g0622 1028 Pfam Leucine Rich Repeat 115 136 IPR001611 GO:0005515(InterPro)
HCH6g0622 1028 Pfam Leucine Rich Repeat 163 184 IPR001611 GO:0005515(InterPro)
HCH6g0622 1028 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 597 - -
HCH6g0622 1028 CDD STKc_IRAK 675 942 - -
HCH6g0622 1028 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 275 369 - -
HCH6g0622 1028 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 201 268 - -
HCH6g0622 1028 Gene3D - 405 597 - -
HCH6g0622 1028 MobiDBLite consensus disorder prediction 995 1028 - -
HCH6g0622 1028 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 18 972 IPR051824 -
HCH6g0622 1028 Gene3D Ribonuclease Inhibitor 165 269 IPR032675 -
HCH6g0622 1028 ProSiteProfiles Protein kinase domain profile. 669 951 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0622 1028 Pfam Malectin domain 410 592 IPR021720 -
HCH6g0622 1028 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 38 200 - -
HCH6g0622 1028 SUPERFAMILY Protein kinase-like (PK-like) 652 941 IPR011009 -
HCH6g0622 1028 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 638 744 - -
HCH6g0622 1028 Gene3D Ribonuclease Inhibitor 270 388 IPR032675 -
HCH6g0622 1028 FunFam Putative LRR receptor-like serine/threonine-protein kinase 745 952 - -
HCH6g0622 1028 Gene3D Transferase(Phosphotransferase) domain 1 745 954 - -
HCH6g0622 1028 Gene3D Ribonuclease Inhibitor 37 162 IPR032675 -
HCH6g0622 1028 Pfam Protein tyrosine and serine/threonine kinase 674 937 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0622 1028 SMART serkin_6 669 938 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0622 1028 SUPERFAMILY L domain-like 82 367 - -
HCH6g0622 1028 Gene3D Phosphorylase Kinase; domain 1 637 744 - -
HCH6g0622 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 791 803 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0622 1028 MobiDBLite consensus disorder prediction 1000 1028 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH12g0992 HCH-Chr12:7255887 HCH6g0622 HCH-Chr6:37425742 0.00E+00 dispersed
HCH12g1335 HCH-Chr12:30382504 HCH6g0622 HCH-Chr6:37425742 2.60E-209 dispersed
HCH3g0739 HCH-Chr3:5310233 HCH6g0622 HCH-Chr6:37425742 1.50E-206 dispersed
HCH6g0622 HCH-Chr6:37425742 HCH7g0069 HCH-Chr7:456461 2.70E-224 dispersed
HCH9g0693 HCH-Chr9:4616590 HCH6g0622 HCH-Chr6:37425742 8.90E-67 dispersed
HCH9g1262 HCH-Chr9:35875538 HCH6g0622 HCH-Chr6:37425742 7.90E-28 dispersed
HCH12g0989 HCH-Chr12:7186492 HCH6g0622 HCH-Chr6:37425742 1.50E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81565 PF07714 PK_Tyr_Ser-Thr 9.10E-48 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0622 - - - 0.0