Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0624 ATGACGTCAGGATCAAGGTTACCAACATGGAGAGAGAGGGAGAATAACAAAAGAAGAGAGAGAAGGAGAAGAGCTATAGCTGCGAAGATCTTTTCTGGACTCAGGATGTACGGAAACTACAAGCTTCCAAAGCATTGTGATAATAATGAAGTTCTTAAAGCTCTTTGTAATGAAGCTGGTTGGACTGTCGAACCTGATGGTACTACTTACCGTAAGGGTTGCAAGCCAATTGAACGCATGGATGTGGTTGGTGGATCGGCAGCTGCAAGCCCGTATGCATCTCACCAACCTAGTCCTTGTGCTTCCTTCAATCCAAGTCCTGTCTCATCTTCTTTTCCAAGTCCAGCTTCATCCTCATATGTTGCTAATCCGAACACGGACGGCAATTCATTAATCCCATGGCTCAAAAACCTTTCATCTTCATCTTCGTCAGCATCCTCTTCTAAGTTCCCTAATATCTATATTCATGGAGGTTCAATCAGCGCTCCTGTTACCCCTCCTCTGAGTTCCCCAACTGCCAGAACACCCCGACTCAAATCTGACTGGGAAGACCCGTCAGGCATCCCGGGATGGAGTTCACAGTACTACTCCTCCCAGCCATCTTCTACTCCACCAAGCCCTGGACGTCAGATTCTTCCTACACCAGAATGGTTTGCTGGGATTAGAATTCCCCAGGGTGGACCTAATTCTCCAACATTTACTCTTGTTTCTACAAACCCATTTGGTTTCAAGGAAGCAGCAATAGCTGGCGGTGGGTCTCGCATGTGGACTCCTGGGCAAAGTGGGACCTGTTCTCCTGCCATTGCAGCAGGCTCTGATCACACTGCCGATATTCCGATGTCGGAAGTGATTTCGGATGAGTTTGCATTTGGAAGCAATGTGGCAGGGTTAGTGAAGCCATGGGAAGGGGAACGGATTCATGAAGAGTGTGGATCAGATGACCTAGAGCTTACTCTTGGGAACTCAAGGACCAGGTAA 978 47.75 MTSGSRLPTWRERENNKRRERRRRAIAAKIFSGLRMYGNYKLPKHCDNNEVLKALCNEAGWTVEPDGTTYRKGCKPIERMDVVGGSAAASPYASHQPSPCASFNPSPVSSSFPSPASSSYVANPNTDGNSLIPWLKNLSSSSSSASSSKFPNIYIHGGSISAPVTPPLSSPTARTPRLKSDWEDPSGIPGWSSQYYSSQPSSTPPSPGRQILPTPEWFAGIRIPQGGPNSPTFTLVSTNPFGFKEAAIAGGGSRMWTPGQSGTCSPAIAAGSDHTADIPMSEVISDEFAFGSNVAGLVKPWEGERIHEECGSDDLELTLGNSRTR 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 37496919 37499553 - evm.model.ptg000003l.1168 HCH6g0624 546118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0624 325 MobiDBLite consensus disorder prediction 190 205 - -
HCH6g0624 325 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 1 325 IPR033264 GO:0003700(InterPro)|GO:0006351(InterPro)|GO:0009742(InterPro)
HCH6g0624 325 MobiDBLite consensus disorder prediction 164 211 - -
HCH6g0624 325 MobiDBLite consensus disorder prediction 1 21 - -
HCH6g0624 325 Pfam BES1/BZR1 plant transcription factor, N-terminal 4 139 IPR008540 -
HCH6g0624 325 MobiDBLite consensus disorder prediction 91 108 - -
HCH6g0624 325 MobiDBLite consensus disorder prediction 88 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH3g0734 HCH-Chr3:5279590 HCH6g0624 HCH-Chr6:37496919 5.10E-129 dispersed
HCH4g0706 HCH-Chr4:4591031 HCH6g0624 HCH-Chr6:37496919 8.00E-47 dispersed
HCH6g0624 HCH-Chr6:37496919 HCH14g0542 HCH-Chr14:34338236 1.70E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33709 PF05687 BES1_N 1.20E-65 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0624 - - - 0.0