Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0633 ATGTCTCTTCGGAAATCGTTTCTTTCTCGGAAATTTTCTTCTAGGTCTTATAAGGATCCGAATCTTATCGGAGGAATCGCCCGAATCGCCGCCGCATCGGAGGTTGAAAATGACTCCGGTGATTGGAAAAACGGTGACTCTTCCTGGTCCTCCATGCTCCCGGAGCTTCTTGGAGAGATCATTCAGCGCGTGGAGGCCACGGAGGATCGTTGGCCTGATCGCCAAAACGTCGTTTCCTGCGCTTGTGTTTGTAAGCGTTGGAGAGATATTACTAAGGAGATCTCTAGGGCTTCTCCACATACGGGGAAAATTACTTTCCCTTCTTGCCTCAAACAGCCTGGACCAAGTGACCTTCCACATCAGTGTCTTATAAAAAGGAACAAGAAGACTTCGACGTTTTACCTTTATCTTGCCCTTTCCCCATCATTTACAGATAAGGGCAAATTCCTCTTGGCCGCTCGGAGGTATAGGCATGGAGCTCATACTGAGTATATAATATCTCTTGATGCTGAAGACTTATCCCAAGGAAGCAATGCTTATGTGGGAAAATTAAGCTCAGATTTTCTTGGCACCAATTTTACAATTTATGATAGCCAACCACCACATAATGGTGCAAAGCCATCAAGCAGTAGAGCAAGTCGCCGTTTTGCAAGCAAGCAAATTAGCCCGCAAGTTTCTGCAGGTAACTTTGAGGTTGGGCAGGTCTCTTACAAATTTAACCTTTTAAAATCAAGAGGTCCTAGAAGAATGTTATGCTCACTGAAGTGCCCGATATTGGAAGACAGTGCCACCAACAAACCTTGTGATGATAACTCGAAGATGAAGAAACCCGAATCCTGTTCTTCTTCATCTGGGTTGACAGTCTTGAGAAACAAAGCTCCTAGGTGGCATGAACACTTGCAATGCTGGTGTTTGAATTTCCATGGTCGGGTGACAGTAGCATCGGTAAAAAACTTTCAACTTGTTGCTACTTTGGACCAAAGTCAACCAGGAGGTAAAGGGGACGAAGAAACAGTCCTCCTTCAGTTTGGGAAGGTTGGCGACGATACATTTACTATGGATTATAGGCAGCCATTATCCGCATTCCAGGCTTTCGCCATTTGCCTTACAAGCTTCGGCACAAAGTTGGCATGCGAGTAG 1140 45.35 MSLRKSFLSRKFSSRSYKDPNLIGGIARIAAASEVENDSGDWKNGDSSWSSMLPELLGEIIQRVEATEDRWPDRQNVVSCACVCKRWRDITKEISRASPHTGKITFPSCLKQPGPSDLPHQCLIKRNKKTSTFYLYLALSPSFTDKGKFLLAARRYRHGAHTEYIISLDAEDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHNGAKPSSSRASRRFASKQISPQVSAGNFEVGQVSYKFNLLKSRGPRRMLCSLKCPILEDSATNKPCDDNSKMKKPESCSSSSGLTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATLDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38041089 38045159 - evm.model.ptg000003l.1159 HCH6g0633 546127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0633 379 Pfam F-box domain 49 92 IPR001810 GO:0005515(InterPro)
HCH6g0633 379 SUPERFAMILY F-box domain 48 92 IPR036047 GO:0005515(InterPro)
HCH6g0633 379 Pfam Tub family 110 374 IPR000007 -
HCH6g0633 379 Gene3D Tubby Protein; Chain A 105 379 IPR025659 -
HCH6g0633 379 Gene3D - 44 96 - -
HCH6g0633 379 CDD F-box_AtTLP-like 49 93 - -
HCH6g0633 379 ProSitePatterns Tub family signature 2. 364 379 IPR018066 -
HCH6g0633 379 PRINTS Tubby superfamily signature 164 180 IPR000007 -
HCH6g0633 379 PRINTS Tubby superfamily signature 289 306 IPR000007 -
HCH6g0633 379 PRINTS Tubby superfamily signature 336 355 IPR000007 -
HCH6g0633 379 PRINTS Tubby superfamily signature 357 379 IPR000007 -
HCH6g0633 379 PRINTS Tubby superfamily signature 180 204 IPR000007 -
HCH6g0633 379 PRINTS Tubby superfamily signature 229 256 IPR000007 -
HCH6g0633 379 PRINTS Tubby superfamily signature 307 323 IPR000007 -
HCH6g0633 379 SUPERFAMILY Tubby C-terminal domain-like 100 379 IPR025659 -
HCH6g0633 379 ProSitePatterns Tub family signature 1. 307 320 IPR018066 -
HCH6g0633 379 PANTHER TUBBY-RELATED 29 378 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0633 HCH-Chr6:38041089 HCH6g1661 HCH-Chr6:49522540 1.70E-99 dispersed
HCH6g0633 HCH-Chr6:38041089 HCH7g1132 HCH-Chr7:44085791 9.00E-101 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33710 PF01167 Tub 3.10E-103 CL0395 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0633 K19600 - csv:101211968 644.81