Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0639 ATGACTTGTTTCTCTTTTTGTTCAAGAGGAAAAGGAGATTCTTCGGCTTCACAAACAACTGGAGCAGTTGAAGGTTTATTTAATACGGAGATTTCGGATATTCGGAATGTTCGCTTATACTCGTACAAAGAACTGAGAAAAGCCACGGCAAATTTCAGTGCGGAAAATAAACTTGGACAGGGAGGCTTTGGATCTGTCTTCAAGGGAAGGCTGAAAGATGGAAAACTGGCTGCTATAAAAGTATTATCTGCTGACTCAAGGCAAGGGATTCGGGAGTTTTTGACCGAAATCAATGTGATATCAGTTATAAAACACAGTAACCTTGTTAAGTTGTATGGTTGTTGTGTTGAAGGGCACCACAGGATCTTGGTCTATCCTTACCTAGAAAATAATAGCCTTGACAGGACACTTCTCAGTGGTGGAGGACAAAGGAATATCCAATTCTCTTGGCAAACAAGGTGTAAAATATGCATTGGCATAGCGCAAGGGCTTGCATTTCTTCATGAGGAAGTTCAACCACATGTTATTCACAGGGACATCAAAGCAAGCAATATCCTACTTGATAAGGATCTAAACCCAAAAATATCTGATTTTGGTCTGGCAAAGTTGATCCCTGCTCACCTGACGCATATTAGTACACGTGTTGCTGGGACAGCAGGTTATCTTGCACCTGAATATGCTGTACGGGGGCAAGCAACAAGAAGAACAGATATTTATAGTTTTGGTGTTTTAGTCTTGGAGATTGTTTGTGGGAGGTATAACACAAATAGACGGTTGCCTGCTGGAGAACCATATCTTCTTGAAAAGGTGTGGGAACTTTATGAGAGGGGGCAGTTGCTGGAATTGGTAGACCCATCATTATACGGGGCGTTCGATGCCGAGGAAGCGTGCAGATACTTAAAAGTTGGCCTTCTCTGCTCCCAAGATATGCCAAATCTCCGGCCATCAATGTCGACCGTTGTCAAGATGCTAACAGGTGATGTTGATTTATCTGATCAAACAATATCTAAACCAGGACTGCTTTCAGAGTTCATGCTTCGAAAAGATGTATTGGGCAAGAACGGAGGGTTTGATGGGAAGGTTGCGTCTACCCCCGAAGACTCGGGAAAGCCTATTGATTCAAGTTCGTCGTCGGGTTATATGGACACCTCGCACGCTACCATGACCTTCAATTCAATATTTGATCGTAGTAATTGA 1197 42.77 MTCFSFCSRGKGDSSASQTTGAVEGLFNTEISDIRNVRLYSYKELRKATANFSAENKLGQGGFGSVFKGRLKDGKLAAIKVLSADSRQGIREFLTEINVISVIKHSNLVKLYGCCVEGHHRILVYPYLENNSLDRTLLSGGGQRNIQFSWQTRCKICIGIAQGLAFLHEEVQPHVIHRDIKASNILLDKDLNPKISDFGLAKLIPAHLTHISTRVAGTAGYLAPEYAVRGQATRRTDIYSFGVLVLEIVCGRYNTNRRLPAGEPYLLEKVWELYERGQLLELVDPSLYGAFDAEEACRYLKVGLLCSQDMPNLRPSMSTVVKMLTGDVDLSDQTISKPGLLSEFMLRKDVLGKNGGFDGKVASTPEDSGKPIDSSSSSGYMDTSHATMTFNSIFDRSN 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38236753 38242206 + evm.model.ptg000003l.1153 HCH6g0639 546133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0639 398 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524(InterPro)
HCH6g0639 398 Pfam Protein kinase domain 53 253 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0639 398 MobiDBLite consensus disorder prediction 357 380 - -
HCH6g0639 398 SMART serkin_6 52 313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0639 398 FunFam cold-responsive protein kinase 1 25 127 - -
HCH6g0639 398 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 36 348 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
HCH6g0639 398 CDD STKc_IRAK 58 326 - -
HCH6g0639 398 FunFam Putative LRR receptor-like serine/threonine-protein kinase 128 336 - -
HCH6g0639 398 Gene3D Phosphorylase Kinase; domain 1 26 127 - -
HCH6g0639 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH6g0639 398 ProSiteProfiles Protein kinase domain profile. 52 335 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH6g0639 398 Gene3D Transferase(Phosphotransferase) domain 1 128 337 - -
HCH6g0639 398 SUPERFAMILY Protein kinase-like (PK-like) 34 324 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0639 HCH-Chr6:38236753 HCH7g0034 HCH-Chr7:244029 4.20E-93 dispersed
HCH11g0098 HCH-Chr11:1202102 HCH6g0639 HCH-Chr6:38236753 1.20E-92 transposed
HCH3g0635 HCH-Chr3:4419389 HCH6g0639 HCH-Chr6:38236753 1.40E-95 transposed
HCH6g0575 HCH-Chr6:33799439 HCH6g0639 HCH-Chr6:38236753 7.80E-140 transposed
HCH9g0595 HCH-Chr9:4001087 HCH6g0639 HCH-Chr6:38236753 6.90E-98 transposed
HCH14g0996 HCH-Chr14:37289356 HCH6g0639 HCH-Chr6:38236753 1.80E-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
81566 PF00069 Pkinase 1.80E-45 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0639 - - - 0.0