Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0648 ATGGGAGAAAGCAACCGCCAAACTACAACACCGTCAAGATTGGGGATGAGAAACAGCAGCGGTGGAGAGATCGTGGAAGTTCAAGGAGGCCACATTGTTCGTTCCACAGGAAGAAAAGACCGTCACAGCAAAGTTTGTACTGCAAAAGGCCCAAGAGACCGTCGTGTTCGTCTCTCTGCTCATACTGCCATCCAATTCTACGATGTCCAAGACCGCCTCGGCTACGACCGACCCAGCAAAGCTGTTGATTGGCTCATCAAGAAGGCCAAGGCTGCTATTGACGAGCTCGCTGAGCTCCCTGCATGGACTCCAACGACAACAGATGCAGCCACACAGCAGCAGCAGCAGCATTTGAATGATGACACTGAGAATCTACTTTCTGTACAACGTGATGTTTTTAACACAACTGGTAATAGGAGAGGGACAGAGGTTTCTATGCAGAATTTGCAGCATACCCAAATGGCAAATAACACCACTTCAAGCTTTCTTCCACCTTCGTTGGATTCAGACTCTATTGCTGATACCATCAAATCCTTCTTCCCTATGGGTACGGCTGCTGCGGCCGCTGAGACGACTTCTTCGACGATTCAATTTCAGAATTACCCACAAGATTTACTGTCGAGGACTAGTAGCCACAATCAAGATCTGCGGCTTTCTTTGCAGTCTTTTCAAGACCCAATTGCAATTCATCATCATCACCATGCTCAGCACCAGCACCAGACTCAAGGTCATCAAAATGACCATGTATTATTTTCCGGCACAGCCCCATTGGGAGGGTTTGATGTGTCCACCGGTGGGTGGTCAGAGCACAACAACCTCACACCCGTGGAGATTAGCCGCTTTCAAAGGATGAGTTCTTGGAATGCAGAAACTGGAAGTGGCGGCGCCAGTGGCAGTGGTCACGGTGGAGCTGGAATTAGGAGCTCAGGAGCAGGATATGTATTCAATTCGCCTCATTTGCAAGCTCCACTGCCGACGACACCGCCATTTTTGCAGCCGTTATTCGGCGAAAACCAGTTCTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACACCTGTTCGCACTTGGATCGACCCATCACTAACTACCACCGATCATCAACATCAACAGCATCATCAAATGCCTCCATCAATCCACCAATCTTCATTCACAGGGTTAGGATTCGCCACAAGCGGATTCTCCGGGTTTCATGTTCCAACGCGAATTCAGGGTGAAGAGGAACACGATGGCATTTCCGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1278 49.45 MGESNRQTTTPSRLGMRNSSGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWTPTTTDAATQQQQQHLNDDTENLLSVQRDVFNTTGNRRGTEVSMQNLQHTQMANNTTSSFLPPSLDSDSIADTIKSFFPMGTAAAAAETTSSTIQFQNYPQDLLSRTSSHNQDLRLSLQSFQDPIAIHHHHHAQHQHQTQGHQNDHVLFSGTAPLGGFDVSTGGWSEHNNLTPVEISRFQRMSSWNAETGSGGASGSGHGGAGIRSSGAGYVFNSPHLQAPLPTTPPFLQPLFGENQFFSQRGPLQSSNTPVRTWIDPSLTTTDHQHQQHHQMPPSIHQSSFTGLGFATSGFSGFHVPTRIQGEEEHDGISDKPSSASSDSRH 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38603855 38605132 + evm.model.ptg000003l.1144 HCH6g0648 546142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0648 425 MobiDBLite consensus disorder prediction 403 425 - -
HCH6g0648 425 Pfam TCP family transcription factor 37 151 IPR017887 -
HCH6g0648 425 ProSiteProfiles TCP domain profile. 38 96 IPR017887 -
HCH6g0648 425 MobiDBLite consensus disorder prediction 1 17 - -
HCH6g0648 425 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 372 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
HCH6g0648 425 MobiDBLite consensus disorder prediction 1 52 - -
HCH6g0648 425 MobiDBLite consensus disorder prediction 33 52 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0648 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0807 HCH-Chr1:56766151 HCH6g0648 HCH-Chr6:38603855 2.20E-15 dispersed
HCH2g0867 HCH-Chr2:52263541 HCH6g0648 HCH-Chr6:38603855 1.20E-26 dispersed
HCH3g0687 HCH-Chr3:4886813 HCH6g0648 HCH-Chr6:38603855 2.00E-17 dispersed
HCH6g0648 HCH-Chr6:38603855 HCH9g0307 HCH-Chr9:1900802 3.30E-19 dispersed
HCH12g1028 HCH-Chr12:7639119 HCH6g0648 HCH-Chr6:38603855 3.40E-91 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0544 . 28 238 TCP Transcription Factor Family AT5G23280 57.8 2.0e-56 216.1
HCH10g1153 . 22 252 TCP Transcription Factor Family AT5G23280 54.5 2.4e-54 209.1
HCH13g1174 . 64 332 TCP Transcription Factor Family AT2G45680 55.0 3.5e-62 235.7
HCH1g0935 . 76 180 TCP Transcription Factor Family AT3G47620 85.0 1.9e-42 170.6
HCH3g0046 . 52 161 TCP Transcription Factor Family AT3G47620 79.3 1.9e-39 160.6
HCH1g1177 . 127 209 TCP Transcription Factor Family AT3G47620 89.2 2.6e-36 150.2
HCH9g0048 . 1 307 TCP Transcription Factor Family AT3G27010 56.5 1.9e-67 253.1
HCH1g0544 . 25 236 TCP Transcription Factor Family AT5G08330 60.9 3.3e-56 215.3
HCH10g1153 . 1 251 TCP Transcription Factor Family AT5G08330 51.9 2.1e-55 212.6
HCH8g1238 . 33 227 TCP Transcription Factor Family AT5G60970 51.3 2.5e-44 176.4
HCH9g0307 . 31 131 TCP Transcription Factor Family AT3G02150 75.7 2.0e-38 156.8
HCH6g0648 . 21 224 TCP Transcription Factor Family AT2G31070 51.4 1.7e-40 163.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001202 4 3 4 3 3 1 4 2 1 2 2 2 4 2 2 3 2 4 4 2 2 2 2 2 2 2 2 3 3 1 75
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33711 PF03634 TCP 2.20E-31 No_clan HCH TF