Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0648 ATGGGAGAAAGCAACCGCCAAACTACAACACCGTCAAGATTGGGGATGAGAAACAGCAGCGGTGGAGAGATCGTGGAAGTTCAAGGAGGCCACATTGTTCGTTCCACAGGAAGAAAAGACCGTCACAGCAAAGTTTGTACTGCAAAAGGCCCAAGAGACCGTCGTGTTCGTCTCTCTGCTCATACTGCCATCCAATTCTACGATGTCCAAGACCGCCTCGGCTACGACCGACCCAGCAAAGCTGTTGATTGGCTCATCAAGAAGGCCAAGGCTGCTATTGACGAGCTCGCTGAGCTCCCTGCATGGACTCCAACGACAACAGATGCAGCCACACAGCAGCAGCAGCAGCATTTGAATGATGACACTGAGAATCTACTTTCTGTACAACGTGATGTTTTTAACACAACTGGTAATAGGAGAGGGACAGAGGTTTCTATGCAGAATTTGCAGCATACCCAAATGGCAAATAACACCACTTCAAGCTTTCTTCCACCTTCGTTGGATTCAGACTCTATTGCTGATACCATCAAATCCTTCTTCCCTATGGGTACGGCTGCTGCGGCCGCTGAGACGACTTCTTCGACGATTCAATTTCAGAATTACCCACAAGATTTACTGTCGAGGACTAGTAGCCACAATCAAGATCTGCGGCTTTCTTTGCAGTCTTTTCAAGACCCAATTGCAATTCATCATCATCACCATGCTCAGCACCAGCACCAGACTCAAGGTCATCAAAATGACCATGTATTATTTTCCGGCACAGCCCCATTGGGAGGGTTTGATGTGTCCACCGGTGGGTGGTCAGAGCACAACAACCTCACACCCGTGGAGATTAGCCGCTTTCAAAGGATGAGTTCTTGGAATGCAGAAACTGGAAGTGGCGGCGCCAGTGGCAGTGGTCACGGTGGAGCTGGAATTAGGAGCTCAGGAGCAGGATATGTATTCAATTCGCCTCATTTGCAAGCTCCACTGCCGACGACACCGCCATTTTTGCAGCCGTTATTCGGCGAAAACCAGTTCTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACACACCTGTTCGCACTTGGATCGACCCATCACTAACTACCACCGATCATCAACATCAACAGCATCATCAAATGCCTCCATCAATCCACCAATCTTCATTCACAGGGTTAGGATTCGCCACAAGCGGATTCTCCGGGTTTCATGTTCCAACGCGAATTCAGGGTGAAGAGGAACACGATGGCATTTCCGACAAGCCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1278 49.45 MGESNRQTTTPSRLGMRNSSGGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDELAELPAWTPTTTDAATQQQQQHLNDDTENLLSVQRDVFNTTGNRRGTEVSMQNLQHTQMANNTTSSFLPPSLDSDSIADTIKSFFPMGTAAAAAETTSSTIQFQNYPQDLLSRTSSHNQDLRLSLQSFQDPIAIHHHHHAQHQHQTQGHQNDHVLFSGTAPLGGFDVSTGGWSEHNNLTPVEISRFQRMSSWNAETGSGGASGSGHGGAGIRSSGAGYVFNSPHLQAPLPTTPPFLQPLFGENQFFSQRGPLQSSNTPVRTWIDPSLTTTDHQHQQHHQMPPSIHQSSFTGLGFATSGFSGFHVPTRIQGEEEHDGISDKPSSASSDSRH 425
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38603855 38605132 + evm.model.ptg000003l.1144 HCH6g0648 546142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0648 425 MobiDBLite consensus disorder prediction 403 425 - -
HCH6g0648 425 Pfam TCP family transcription factor 37 151 IPR017887 -
HCH6g0648 425 ProSiteProfiles TCP domain profile. 38 96 IPR017887 -
HCH6g0648 425 MobiDBLite consensus disorder prediction 1 17 - -
HCH6g0648 425 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 14 372 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
HCH6g0648 425 MobiDBLite consensus disorder prediction 1 52 - -
HCH6g0648 425 MobiDBLite consensus disorder prediction 33 52 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH1g0807 HCH-Chr1:56766151 HCH6g0648 HCH-Chr6:38603855 2.20E-15 dispersed
HCH2g0867 HCH-Chr2:52263541 HCH6g0648 HCH-Chr6:38603855 1.20E-26 dispersed
HCH3g0687 HCH-Chr3:4886813 HCH6g0648 HCH-Chr6:38603855 2.00E-17 dispersed
HCH6g0648 HCH-Chr6:38603855 HCH9g0307 HCH-Chr9:1900802 3.30E-19 dispersed
HCH12g1028 HCH-Chr12:7639119 HCH6g0648 HCH-Chr6:38603855 3.40E-91 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
33711 PF03634 TCP 2.20E-31 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0648 - - - 0.0