Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH6g0649 ATGAGTCCTCCAGCAAACTGTTTTTGGACTACGTTTAAGCTCCGGAGGAAGATAAAGCGAGAGACTAACAATGGAGAACAGGTACATTCAAACACTGGAAAATCCAGTGGTCACCTCAACCTCAATGGGAGGCATGAAGATATAGCTGCATCTCGGATTCAAACTGCATTTCGGGCATTTACGGCCAAAAAAGTTGTACATAATTCGAAGGGGCCAGTAAGATTTCAGGATCTAGTTCAAGGTGAAATGGCTACGAAACAAGTGTTAACCGCATTAAGCTTCATACATTCATGGAGCAGAATGCAGCAAGAAATTAGAGCGCGTAGACTCTGTATGGTCACGGAATATCGAATCAAGCAAAAGAAACTAGAAAATGAGCTAAAGCTCGAGGCTAAGTTTCATGAACTTGAGGTTAAATGGTGCGGTGGATCTGAAACAATGGAAGAAATTCTCACAAAAATTCAGCAACGAGAAGAAGCGGCAGTGAGACGCGAGCGAACTATGGCTTATGCGTTCTCCCACCAGTGGAGGGCTAACTCTATCTTACATCTTGGTCCGGCTTCATTCAGCCTTGACAAAGAAAATTGGGGATGGAGCTGGAAGGAGAGGTGGATTGCGGCTCGGCCTTGGGAGATTGGACCTCATGCTCATCCCACCATTCCAAAGAAATTGCAGACTAAGCATACAAACAAACTGGACAAAGTCACGACATGTCGACCCGAGTCGAAGCTGTCGAACTCAGTCGGGCATTCTTTGTCAAATGGCAATGGCAAGGGAAGTTCAAAGGCCAGAAATTCTGCCATATCAAATTGCTGA 816 45.1 MSPPANCFWTTFKLRRKIKRETNNGEQVHSNTGKSSGHLNLNGRHEDIAASRIQTAFRAFTAKKVVHNSKGPVRFQDLVQGEMATKQVLTALSFIHSWSRMQQEIRARRLCMVTEYRIKQKKLENELKLEAKFHELEVKWCGGSETMEEILTKIQQREEAAVRRERTMAYAFSHQWRANSILHLGPASFSLDKENWGWSWKERWIAARPWEIGPHAHPTIPKKLQTKHTNKLDKVTTCRPESKLSNSVGHSLSNGNGKGSSKARNSAISNC 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 38607177 38612911 - evm.model.ptg000003l.1143 HCH6g0649 546143

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH6g0649 271 MobiDBLite consensus disorder prediction 226 271 - -
HCH6g0649 271 MobiDBLite consensus disorder prediction 239 271 - -
HCH6g0649 271 PANTHER IQ-DOMAIN 5-RELATED 35 246 - -
HCH6g0649 271 MobiDBLite consensus disorder prediction 25 39 - -
HCH6g0649 271 MobiDBLite consensus disorder prediction 21 42 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH6g0649 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH6g0649 HCH-Chr6:38607177 HCH9g0605 HCH-Chr9:4048401 5.00E-21 dispersed
HCH14g0967 HCH-Chr14:37105242 HCH6g0649 HCH-Chr6:38607177 1.00E-54 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30